We utilize the recently developed surface Cauchy–Born model, which extends the standard Cauchy–Born theory to account for surface stresses due to undercoordinated surface atoms, to study the coupled influence of boundary conditions and surface stresses on the resonant properties of gold nanowires with surfaces. There are two major purposes to the present work. First, we quantify, for the first time, variations in the nanowire resonant frequencies due to surface stresses as compared to the corresponding bulk material which does not observe surface effects within a finite deformation framework depending on whether fixed/free or fixed/fixed boundary conditions are utilized. We find that while the resonant frequencies of fixed/fixed nanowires are elevated as compared to the corresponding bulk material, the resonant frequencies of fixed/free nanowires are reduced as a result of compressive strain caused by the surface stresses. Furthermore, we find that for a diverse range of nanowire geometries, the variation in resonant frequencies for both boundary conditions due to surface stresses is a geometric effect that is characterized by the nanowire aspect ratio. The present results are found to agree well with existing experimental data for both types of boundary conditions.