Micronekton abundance, biomass, and community composition was determined from 58 Cobb trawl samples taken from 2005 to 2008 at several locations in the lee of the Hawaiian Islands. The results indicated a strong influence of the lunar illumination on micronekton abundance and biomass. This effect was evident in shallow night tows and probably was the result of lunar light affecting the nighttime depths of migrating species. The abundance and biomass of micronekton is remarkably consistent between years and areas in Hawaiian waters after the affects of moon phase are accounted for. Micronekton, principally migratory myctophids, were reduced over the summit of Cross Seamount but not Finch Seamount that has a summit below the daytime depth of most migrators. However, during a new moon, micronekton abundance over Cross seamount was similar to surrounding areas either because of altered migration patterns or because predators such as tunas cannot forage as effectively at night without lunar illumination. Species belonging to the Hawaiian mesopelagic boundary layer community were found to vary in presence and abundance between years at Cross Seamount suggesting that a consistent seamount associated fauna does not exist. Sparse sampling of a cyclonic mid-ocean eddy suggested very high micronekton abundance and biomass both in shallow waters at night but also at depth during the day. Although preliminary, these results suggest that eddies may aggregate the micronekton which probably feed on the enhanced secondary productivity.Highlights► The micronekton community was studied in the Hawaiian Islands. ► Lunar illumination alters micronekton abundance and biomass in surface waters at night. ► The first study to examine the influence of lunar illumination with a seamount. ► Cross seamount had reduced abundances of micronekton but not during the new moon. ► Cyclonic mid-ocean eddies may increase the abundance of micronekton.