Published in

American Chemical Society, Journal of the American Chemical Society, 40(120), p. 10571-10572, 1998

DOI: 10.1021/ja982592f

Links

Tools

Export citation

Search in Google Scholar

Measurement of Residual Dipolar Couplings of Macromolecules Aligned in the Nematic Phase of a Colloidal Suspension of Rod-Shaped Viruses

Journal article published in 1997 by G. Marius Clore, G. Marius Clore, Mary R. Starich, Angela M. Gronenborn ORCID
This paper is available in a repository.
This paper is available in a repository.

Full text: Download

Red circle
Preprint: archiving forbidden
Orange circle
Postprint: archiving restricted
Red circle
Published version: archiving forbidden
Data provided by SHERPA/RoMEO

Abstract

Residual dipolar couplings provide long-range structural re-straints for NMR structure determination of macromolecules 1 that are not accessible by most other NMR observables, which are dependent on close spatial proximity of atoms. 2 Thus, dipolar couplings provide restraints for defining the relative orientation of structural elements where the information content provided by the NOE restraints is insufficient, either due to the lack of NOEs or to the accumulation of errors over long distances. 2 In addition, the use of various different dipolar couplings (e.g., 1 D NH , 1 D NC′ , 2 D HNC′ , 1 D CH , 1 D CRC′) along the protein backbone narrowly restricts the backbone torsion angles. 3 The measurement of residual dipolar couplings requires that the macromolecule of interest be weakly aligned in the magnetic field. Alignment can be induced in a number of ways including the magnetic field itself 4 or the use of a liquid crystalline medium. 5 In general, alignment arising from the former is very small and cannot be exploited on a routine basis. 2,4 Moderate degrees of alignment, while retaining the resolution, sensitivity, and simplicity obtained in the isotropic phase, can be obtained by dissolving macromolecules in a very dilute liquid crystalline phase 6 of lipid bicelles. 7 For biological macromolecules, the liquid crystalline medium must possess a number of key features; it has to be miscible with water, it should not bind to the macromolecule of interest, it should be stable at dilute concentrations over long periods of time, and it should only induce moderate degrees of alignment. While the bicelles have been successfully applied in a number of cases, 3,6 there are instances where the protein, possibly due to the presence of surface hydrophobic patches, adversely affects the stability of the bicelle, leading to phase separation of its components. 8 In addition, the bicelles are thermotropic, adopting a liquid crystalline phase over a narrow range of temperatures, and are only stable over a limited pH range due to acid-and base-catalyzed hydrolysis of ester bonds. 6 In this paper, we show that the nematic phase of a colloidal suspension of rod-shaped viruses provides an alternative to bicelles. Suspensions of charged, rod-shaped viruses, such as the filamentous baceriophage fd and tobacco mosaic virus (TMV), are known to undergo an isotropic-nematic phase transition at relatively low concentrations. 9 Figure 1 displays the residual one-bond N-H (1 D NH) dipolar couplings for a ∼0.5 mM solution of streptococcal protein G (56 residues) 10 in colloidal suspensions of ∼28 mg/mL fd and ∼50 mg/mL TMV. 11 The values of 1 D NH range from +15 to -15 Hz in the case of the fd suspension and +10 to -10 Hz in the case of the TMV suspension. The general expression for the residual dipolar coupling D AB (θ,φ) between two directly coupled nuclei A and B is given by D a AB {(3cos 2 θ -1) + 3 / 2 R(sin 2 θ cos2φ)}where D a AB and D r AB in units of hertz are the axial and rhombic components of the Examples at the NIH where the bicelles have proved to be unstable include enzyme I, the enzyme I-HPR complex, the N-terminal domain of HIV-1 integrase coordinated to cadmium, SIV gp41 (G.M.C. and A.M.G., unpublished data), the VR domain of a T-cell inhibitor (J. S. Hu and A. Bax, personal communication), and HIV protease (D. Torchia, personal com-munication).