Dissemin is shutting down on January 1st, 2025

Published in

2012 American Control Conference (ACC)

DOI: 10.1109/acc.2012.6314705

Links

Tools

Export citation

Search in Google Scholar

Design tradeoffs in a synthetic gene control circuit for metabolic networks

Proceedings article published in 2012 by D. A. Oyarzun, G.-B. Stan ORCID
This paper is available in a repository.
This paper is available in a repository.

Full text: Download

Green circle
Preprint: archiving allowed
Green circle
Postprint: archiving allowed
Red circle
Published version: archiving forbidden
Data provided by SHERPA/RoMEO

Abstract

The performance of genetic control circuits for metabolism is subject to a number of tradeoffs that must be addressed at the design stage. We explore how the metabolic steady state and transient response depend on the regulatory topology and design parameters such as promoter and ribosome binding site strengths. We consider a one-to-all transcriptional control circuit for an unbranched metabolic pathway with saturable enzyme kinetics. The analysis highlights a compromise between operon and non-operon topologies in terms of robustness and design flexibility. We show that enzyme half-lives are an upper bound on the speed at which the pathway can adapt to a changing metabolic demand. We also analyze the destabilizing effect of basal enzyme expression and high regulatory sensitivity, albeit the latter reduces the steady state product bias.