Mercaptosuccinic acid-capped CdSe and alloyed CdSe(S) QDs were prepared in aqueous solution at 100 and 170◦C, respectively. These dots were characterized by transmission electron microscopy (TEM), X-ray diffraction (XRD), and UV-vis and photoluminescence spectroscopies. The dots were found to be of similar size (ca. 2 nm) but differ in their composition and surface chemistry. The photostability of the QDs was found to correlate with their ability to produce reactive oxygen species (ROS) upon light activation.CdSe QDs produce hydroxyl radicals immediately after irradiation due to their modest photostability, while CdSe(S) QDs start to generate the hydroxyl radicals only once they start to be bleached (ca. 30 min). Cytotoxicity experiments conducted on Escherichia coli cells revealed that CdSe QDs were the more toxic despite being the least loaded in cadmium. In addition, consistent with ROS assays, the cytotoxicity ofthe CdSe QDs appeared light-dependent and is in accordance with a light-dependent oxidative stress observed with an oxyR-based whole cell biosensor. Our results demonstrate the crucial role played by nanoparticles synthesis process on their PL properties, their stability and their toxicity.