Groundwater resource estimates require the calculation of recharge using a daily time step. Within climate-change impact studies, this inevitably necessitates temporal downscaling of global or regional climate model outputs. This paper compares future estimates of potential groundwater recharge calculated using a daily soil-water balance model and climate-change weather time series derived using change factor (deterministic) and weather generator (stochastic) methods for Coltishall, UK. The uncertainty in the results for a given climate-change scenario arising from the choice of downscaling method is greater than the uncertainty due to the emissions scenario within a 30-year time slice. Robust estimates of the impact of climate change on groundwater resources require stochastic modelling of potential recharge, but this has implications for groundwater model runtimes. It is recommended that stochastic modelling of potential recharge is used in vulnerable or sensitive groundwater systems, and that the multiple recharge time series are sampled according to the distribution of contextually important time series variables, e.g. recharge drought severity and persistence (for water resource management) or high recharge years (for groundwater flooding). Such an approach will underpin an improved understanding of climate change impacts on sustainable groundwater resource management based on adaptive management and risk-based frameworks.