Augmentation of small rare species populations is sometimes suggested on genetic grounds. However, outbreeding depression via dilution of local adaptation or break-up of genomic coadaptation may occur. These effects depend on the causes of population divergence. Here, we compare genetic measures of population divergence in Liatris scariosa var. novae-angliae, a rare New England perennial. We measured GST, neutral marker subdivision, and QST, quantitative subdivision of propagule and juvenile plant traits. GST was relatively high. QST for leaf shape exceeded GST, indicating local adaptation, while QST for other traits fell within or below the GST range. Local adaptation appears low for juvenile traits, although the high GST cautions against translocation because of potential coadaptation. If translocation is still required, however, donor populations should contain high quantitative genetic diversity. We assess population size and allozyme diversity as predictors of quantitative genetic variation, but find these poor proxies for direct measurement.