Abstract The natural variability of the Weddell Sea variety of Antarctic Bottom Water (AABW) is examined in a long-term integration of a coupled climate model. Examination of passive tracer concentrations suggests that the model AABW is predominantly sourced in the Weddell Sea. The maximum rate of the Atlantic sector Antarctic overturning (ψatl) is shown to effectively represent the outflow of Weddell Sea deep and bottom waters and the compensating inflow of Warm Deep Water (WDW). The variability of ψatl is found to be driven by surface density variability, which is in turn controlled by sea surface salinity (SSS). This suggests that SSS is a better proxy than SST for post-Holocene paleoclimate reconstructions of the AABW overturning rate. Heat–salt budget and composite analyses reveal that during years of high Weddell Sea salinity, there is an increased removal of summertime sea ice by enhanced wind-driven ice drift, resulting in increased solar radiation absorbed into the ocean. The larger ice-free region in summer then leads to enhanced air–sea heat loss, more rapid ice growth, and therefore greater brine rejection during winter. Together with a negative feedback mechanism involving anomalous WDW inflow and sea ice melting, this results in positively correlated θ–S anomalies that in turn drive anomalous convection, impacting AABW variability. Analysis of the propagation of θ–S anomalies is conducted along an isopycnal surface marking the separation boundary between AABW and the overlying Circumpolar Deep Water. Empirical orthogonal function analyses reveal propagation of θ–S anomalies from the Weddell Sea into the Atlantic interior with the dominant modes characterized by fluctuations on interannual to centennial time scales. Although salinity variability is dominated by along-isopycnal propagation, θ variability is dominated by isopycnal heaving, which implies propagation of density anomalies with the speed of baroclinic waves.