Many shallow softwater lakes are being affected by eutrophication and acidification. In these small lakes decaying organic material usually accumulates and characteristic plant and animal species disappear. In many degraded lakes organic matter and macrophytes are being removed in order to restore the lakes to their original state. To assess the effects of restoration management in softwater lakes on aquatic macro-invertebrates, changes in the species assemblages were studied in four degraded lakes in the Netherlands undergoing restoration measures. The degraded lakes still harboured species characteristic of pristine softwaters. However, most of these species were not recorded after restoration measures were taken. Species' densities declined dramatically during the execution of restoration measures. Swimming and abundant species were more likely to survive the restoration measures than other species. The first years after restoration, the lakes did not meet the habitat requirements for a number of species. Species requiring vegetation for ovipositioning, animal food sources and swards of vegetation as habitat declined. Because recolonization is expected to be restricted, it is recommended to ensure the survival of relict populations when taking measures to restore degraded softwater lakes. This may be achieved by phasing restoration measures in space and time, hereby minimizing mortality during the execution of restoration measures and by preserving habitat conditions required by characteristic species.