Detecting, tracking, and classifying unmanned aerial vehicles (UAVs) in a swarm presents significant challenges due to their small and diverse radar cross-sections, multiple flight altitudes, velocities, and close trajectories. To overcome these challenges, adjustments of the radar parameters and/or position of the radar (for airborne platforms) are often required during runtime. The runtime adjustments help to overcome the anomalies in the detection, tracking, and classification of UAVs. The runtime adjustments are performed either manually or through fixed algorithms, each of which can have its limitations for complex and dynamic scenarios. In this work, we propose the use of multi-agent reinforcement learning (RL) to carry out the runtime adjustment of the radar parameters and position of the radar platform. The radar used in our work is a multibeam multifunction phased array radar (MMPAR) placed onboard UAVs. The simulations show that the cognitive adjustment of the MMPAR parameters and position of the airborne platform using RL helps to overcome anomalies in the detection, tracking, and classification of UAVs in a swarm. A comparison with other artificial intelligence (AI) algorithms shows that RL performs better due to the runtime learning of the environment through rewards.