Context Agricultural soils are a major source of emissions of the greenhouse gas nitrous oxide (N2O). Aim Quantify direct N2O emissions from Australian agricultural production systems receiving nitrogen (N) inputs from synthetic and organic fertilisers, crop residues, urine and dung. Method A meta-analysis of N2O emissions from Australian agriculture (2003–2021) identified 394 valid emission factors (EFs), including 102 EFs with enhanced efficiency fertilisers (EEFs). Key results The average EF from all N sources (excluding EEFs) was 0.57%. Industry-based EFs for synthetic N fertiliser (excluding EEFs) ranged from 0.17% (non-irrigated pasture) to 1.77% (sugar cane), with an average Australia-wide EF of 0.70%. Emission factors were independent of topsoil organic carbon content, bulk density and pH. The revised EF for the non-irrigated cropping (grains) industry is now 0.41%; however, geographically-defined EFs are recommended. Urea was the most common N source with an average EF of 0.72% compared to urine (0.20%), dung (0.06%) and organo-mineral mixtures (0.26%). The EF for synthetic N fertilisers in rainfed environments increased by 0.16% for every 100 mm over 300 mm mean annual rainfall. For each additional 50 kg N ha−1 of synthetic fertiliser, EFs increased by 0.13%, 0.31% and 0.38% for the horticulture, irrigated and high rainfall non-irrigated cropping industries, respectively. The use of 3,4 dimethylpyrazole-phosphate (DMPP) produced significant reductions in EFs of 55%, 80% and 84% for the horticulture, non-irrigated and irrigated cropping industries, respectively. Conclusions and implications Incorporation of the revised EFs into the 2020 National Greenhouse Accounts (NGA) produced a 12% increase in direct N2O emissions from the application of synthetic N fertilisers. The lack of country-specific crop residue decomposition data is a major deficiency in the NGA.