AbstractResearch evaluating the impact of silvopastoral systems on physical and biological properties of Amazonian soils is scarce. Thus, this study aimed to compare the soil carbon storage potential and physical and chemical soil properties of silvopastoral systems (SPS) and conventional pastoral systems (CPS) in the San Martin region of Peru. Using the Walkley and Black method, we analyzed soil organic matter at two different depths (0–15 cm and 15–30 cm). In addition, bulk density, soil moisture, total porosity, and mechanical resistance were measured in both systems. The highest (P < 0.05) carbon stocks were reported at 0–15 cm of depth with values of 31.4 Mg ha⁻¹ and 34.4 Mg ha⁻¹ for CPS and SPS, respectively. At 15–30 cm depth, the total carbon stock was higher for SPS, with 29.12 Mg ha⁻¹, than for CPS, which had 26.4 Mg ha⁻¹. Despite the absence of statistically significant differences, soil carbon stocks were higher in SPS. No significant differences in soil moisture were found between systems, although soil moisture was slightly greater in SPS than CPS (28 and 25%, respectively). The CPS had 59% of the total porosity, which was higher than the SPS. Mechanical resistance was lower in SPS (2.15 kg/cm²) than in CPS (2.33 kg/cm²) at 10 cm of depth. These results indicated that the SPS has the potential to store more carbon and improve physical and chemical traits in the soil than the CPS.