Abstract Parental effects comprise a wide range of mechanisms that individuals may adopt to enhance viability and adjust the phenotype of their offspring according to the conditions that the offspring will experience after birth. For example, individual choice of breeding habitat may mediate such parental effects via an effect of prenatal breeding conditions independently or in combination with offspring post-natal environment. However, ecological factors relevant to adaptive breeding habitat choice may vary at different spatial scales, which have been rarely investigated simultaneously. In the first part of the present study we use hierarchical linear models to disentangle micro- and macro-environmental variation in abundance and breeding performance of a small passerine bird, the barn swallow Hirundo rustica. We show that environmental conditions at the scale of nesting microhabitat are more influential than macro-environmental conditions at the scale of foraging range. We then experimentally investigate the effect of variation in microenvironmental conditions on growth and immunity of chicks by partially cross-fostering nestlings immediately after hatching between different nesting micro-habitats. Our results disclosed significant effects of environmental conditions where eggs were laid and incubated but not of those where nestlings grew-up on some components of nestling phenotype important for fitness. These results suggest that adults may enhance offspring quality by adjusting prenatal parental effects mediated by e.g., egg quality according to micro-habitat conditions where parents are breeding