We resolve a previously unrecognized shallow subducting seamount from a re-processed multichannel seismic profile crossing the 1994 Mw 7.8 Java tsunami earthquake rupture area. Seamount subduction occurs where the overriding plate experiences uplift by lateral shortening and vertical thickening. Pronounced back-thrusting at the landward slope of the forearc high and the formation of splay faults branching off the landward flank of the subducting seamount are observed. The location of the seamount in relation to the 1994 earthquake hypocentre and its co-seismic slip model suggests that the seamount acted as a seismic barrier to the up-dip co-seismic rupture propagation of this moderate-size earthquake.