Management of organic matter and micronutrients is very important for the sustainable improvement of soil health. Poor soil organic matter usually results in lower availability of zinc (Zn) micronutrients in plants. Such deficiency in Zn causes a significant decrease in the growth and yield of crops. The need at the current time is to balance the application of organic amendments with Zn micronutrients to achieve optimum crop yields. Thus, the current study was conducted to investigate wheat, using compost as organic matter and Zn as a micronutrient. There were three levels of compost (i.e., control (0C), 5 t/ha (5C) and 10 t/ha (10C)) and four levels of Zn (control (0Zn), 2.5 kg Zn/ha (2.5Zn), 5.0 kg Zn/ha (5.0Zn) and 10.0 kg Zn/ha (10.0Zn)) applied with three replicates. The addition of 10C under 10.0Zn produced significantly better results for the maximum enhancement in plant height (8.08%), tillers/m2 (21.61%), spikes/m2 (22.33%) and spike length (40.50%) compared to 0C. Significant enhancements in 1000-grain weight, biological yield and grain yield also validated the effectiveness of 10C under 10.0Zn compared to 0C. In conclusion, application of 10C with 10.0Zn showed the potential to improve wheat growth and yield attributes. The addition of 10C with 10.0Zn also regulated soil mineral N, total soil N and extractable soil P. Further investigation is recommended with different soil textures to verify 10C with 10.0Zn as the best amendment for the enhancement of wheat yield in poor organic matter and Zn-deficient soils.