Hemicelluloses consume alkali during kraft pulping and dissolve in the black liquor as a low energy fuel. Acidic pre-hydrolysis of softwood chips removes hemicelluloses but preserves cellulose content prior to pulping. This study compared mild pre-hydrolysis (140 °C) kraft pulping with conventional kraft pulping of commercial softwood chips at two H-factors for wood chips with thickness ranging from less than 2 mm to over 6 mm. The chip thickness less than 2 mm increased hemicelluloses oligomer yield and showed little influence on pulp fiber yield. However, the kraft pulp fiber length decreased 5.6%. Kappa number and fiber reject increased dramatically when chip thickness was greater than 6 mm. The detailed compositional analysis of kraft pulp and fiber quality analysis indicate that pre-hydrolysis followed by kraft pulping enhanced delignification with limited reduction of fiber length and width, and increased kinks. Strategic considerations for the integration of pre-hydrolysis into kraft pulping for future biorefineries were outlined.