The invasion of the macroalgae Rugulopteryx okamurae is causing several environmental and economic problems along Spanish Mediterranean coasts. The use of composts based on R. okamurae as a peat alternative in nursery production could be a valid alternative for the exploitation of this organic material. The present study evaluated three different composts as peat substitutes in potting media to grow tomato seedlings: compost of R. okamurae, compost of green horticultural residues (two-thirds) and R. okamurae (one-third), compost of garden pruning residues (two-thirds) and R. okamurae (one-third). Each compost was used to formulate two different substrates to reduce the use of peat (40% compost, 40% peat, 20% perlite) or entirely substitute it (80% compost, 20% perlite), using a control treatment with 80% peat and 20% perlite. Only the control treatment received mineral fertigation during the trial. The results showed that the high initial electrical conductivity and ion concentration were remarkably reduced thanks to the fast leaching of salt that occurred with customary irrigation. Generally, compost-based treatments allowed us to obtain tomato seedlings with satisfactory morphological parameters. The substrates that contained 40% compost of R. okamurae or a compost of garden pruning residues and R. okamurae led to the best results in term of seedling parameters. It is therefore concluded that composts based on R. okamuare could be used as a seedling growing medium for the valorization of algae.