Published in
Nature Research, Nature Biotechnology, 3(38), p. 288-292, 2020
DOI: 10.1038/s41587-019-0360-3
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Butler enables rapid cloud-based analysis of thousands of human genomes.
Journal article published in 2020 by
Liming Yang,
Denis Yuen,
Christina K. Yung,
Junjun Zhang,
Christof von Kalle,
Takashi Yugawa,
Rui Yamaguchi,
Takafumi N. Yamaguchi,
Masakazu Yamamoto,
Shogo Yamamoto,
Hiroki Yamaue,
Fan Yang,
Huanming Yang,
Jean Y. Yang,
Lixing Yang
and other authors.
Liming Yang,
Denis Yuen,
Christina K. Yung,
Junjun Zhang,
Christof von Kalle,
Takashi Yugawa,
Rui Yamaguchi,
Takafumi N. Yamaguchi,
Masakazu Yamamoto,
Shogo Yamamoto,
Hiroki Yamaue,
Fan Yang,
Huanming Yang,
Jean Y. Yang,
Lixing Yang,
Shanlin Yang,
Tsun-Po Yang,
Yang Yang,
Xiaotong Yao,
Marie-Laure Yaspo,
Lucy Yates,
Christina Yau,
Chen Ye,
Kai Ye,
Venkata D. Yellapantula,
Christopher J. Yoon,
Sung-Soo Yoon,
Fouad Yousif,
Jun Yu,
Kaixian Yu,
Willie Yu,
Yingyan Yu,
Ke Yuan,
Yuan Yuan,
Olga Zaikova,
Jorge Zamora,
Marc Zapatka,
Jean C. Zenklusen,
Thorsten Zenz,
Nikolajs Zeps,
Cheng-Zhong Zhang,
Fan Zhang,
Hailei Zhang,
Hongwei Zhang,
Hongxin Zhang,
Jiashan Zhang,
Jing Zhang,
Xiuqing Zhang,
Xuanping Zhang,
Yan Zhang,
Zemin Zhang,
Zhongming Zhao,
Liangtao Zheng,
Xiuqing Zheng,
Wanding Zhou,
Yong Zhou,
Bin Zhu,
Hongtu Zhu,
Jingchun Zhu,
Shida Zhu,
Lihua Zou,
Xueqing Zou,
Anna deFazio,
Nicholas van As,
Carolien H. M. van Deurzen,
Marc J. van de Vijver,
L. van’t Veer,
Christian von Mering,
Zhaohong Chen,
Sergei Yakneen,
Sunghoon Cho,
Wan Choi,
Roland Eils,
Sebastian M. Waszak,
Josep L.-L. Gelpi,
Jongwhi H. Hong,
Carolyn M. Hutter,
Wei Jiao,
Jongsun Jung,
Rolf Kabbe,
Andre Kahles,
Jules N. A. Kerssemakers,
Hyung-Lae Kim,
Hyunghwan Kim,
Jihoon Kim,
Nodirjon Fayzullaev,
Youngwook Kim,
Kortine Kleinheinz,
Michael Koscher,
Antonios Koures,
Milena Kovacevic,
Chris Lawerenz,
Ignaty Leshchiner,
Jia Liu,
Dimitri Livitz,
George L. Mihaiescu,
Sanja Mijalkovic,
Ana Mijalkovic Lazic,
Satoru Miyano,
Naoki Miyoshi,
Vincent Ferretti,
Hardeep K. Nahal-Bose,
Hidewaki Nakagawa,
Mia Nastic,
Steven J. Newhouse,
Jonathan Nicholson,
Brian D. O’Connor,
David Ocana,
Kazuhiro Ohi,
Lucila Ohno-Machado,
Larsson Omberg,
B. F. Francis Ouellette,
Nagarajan Paramasivam,
Marc D. Perry,
Todd D. Pihl,
Manuel Prinz,
Paul Flicek,
Montserrat Puiggròs,
Petar Radovic,
Keiran M. Raine,
Esther Rheinbay,
Mara Rosenberg,
Romina Royo,
Gunnar Rätsch,
Gordon Saksena,
Matthias Schlesner,
Solomon I. Shorser,
Charles Short,
Heidi J. Sofia,
Jonathan Spring,
Lincoln D. Stein,
Adam J. Struck,
Nuno A. Fonseca,
Grace Tiao,
Nebojsa Tijanic,
David Torrents,
Peter Van Loo,
Miguel Vazquez,
David Vicente,
Jeremiah A. Wala,
Zhining Wang,
Johannes Werner,
Ashley Williams,
Youngchoon Woo,
Adam J. Wright,
Qian Xiang,
Michael Gertz,
Jan O. Korbel,
Lauri A. Aaltonen,
Federico Abascal,
Adam Abeshouse,
Hiroyuki Aburatani,
David J. Adams,
Nishant Agrawal,
Keun Soo Ahn,
Sung-Min Ahn,
Hiroshi Aikata,
Gad Getz,
Rehan Akbani,
Kadir C. Akdemir,
Hikmat Al-Ahmadie,
Sultan T. Al-Sedairy,
Fatima Al-Shahrour,
Malik Alawi,
Monique Albert,
Kenneth Aldape,
Ludmil B. Alexandrov,
Adrian Ally,
Kathryn Alsop,
Eva G. Alvarez,
Fernanda Amary,
Samirkumar B. Amin,
Brice Aminou,
Bob Gibson,
Ole Ammerpohl,
Matthew J. Anderson,
Yeng Ang,
Davide Antonello,
Pavana Anur,
Samuel Aparicio,
Elizabeth L. Appelbaum,
Yasuhito Arai,
Axel Aretz,
Koji Arihiro,
Shun-Ichi Ariizumi,
Joshua Armenia,
Laurent Arnould,
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Yassen Assenov,
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Dai-Ying Wu,
Guanming Wu,
Jianmin Wu,
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Qinying Xu,
Yanxun Xu,
Hong Xue,
Shinichi Yachida
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Abstract
AbstractWe present Butler, a computational tool that facilitates large-scale genomic analyses on public and academic clouds. Butler includes innovative anomaly detection and self-healing functions that improve the efficiency of data processing and analysis by 43% compared with current approaches. Butler enabled processing of a 725-terabyte cancer genome dataset from the Pan-Cancer Analysis of Whole Genomes (PCAWG) project in a time-efficient and uniform manner.