The number of seedlings per hill and the configuration of plant row spacing are important management measures to improve rice yield. In the present study, we evaluated the impact of various seedlings per hill (1, 3, 6, and 9 seedlings hill−1) under four different rice verities (two conventional rice, two hybrid rice) on allometric characteristics, nitrogen use efficiency (NUE) and yield in 2020 at early and late season. Results showed that compared with nine seedlings per hill (wide row spacing), the number of effective panicles, yield, grain biomass allocation, grain-to-leaf ratio, grain nitrogen accumulation, nitrogen dry matter production efficiency (NDMPE), N harvest index (NHI) of 1 seedling per hill increased by 21.8%, 10.91%, 10.5%, 32.25%, 17.03%, 9.67%, 6.5%, respectively. With the increase of seedlings per hill and the expansion of row spacing, stem biomass (SB) and reproductive biomass (RB) increased with the increase of above-ground biomass, mainly showing the relationship of isometric growth. Leaf biomass (LB) increased with above-ground biomass, mainly showing the relationship of allometric growth. The results suggested that under the same basic seedlings, transplanting 1 seedling per hill and dense planting was the most beneficial to improve rice yield.