PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

Olson, Nathan D.; Wagner, Justin; McDaniel, Jennifer; Stephens, Sarah H.; Westreich, Samuel T.; Prasanna, Anish G.; Johanson, Elaine; Boja, Emily; Maier, Ezekiel J.; Serang, Omar; Jáspez, David; Lorenzo-Salazar, José M.; Muñoz-Barrera, Adrián; Rubio-Rodríguez, Luis A.; Flores, Carlos; Kyriakidis, Konstantinos; Malousi, Andigoni; Shafin, Kishwar; Pesout, Trevor; Jain, Miten; Jain, M.; Paten, Benedict; Chang, Pi-Chuan; Kolesnikov, Alexey; Nattestad, Maria; Baid, Gunjan; Goel, Sidharth; Yang, Howard; Carroll, Andrew; Eveleigh, Robert; Bourgey, Mathieu; Bourque, Guillaume; Li, Gen; Ma, ChouXian; ChouXian,; Tang, LinQi; Du, YuanPing; Zhang, ShaoWei; Morata, Jordi; Tonda, Raúl; Parra, Genís; Trotta, Jean-Rémi; Brueffer, Christian; Demirkaya-Budak, Sinem; Kabakci-Zorlu, Duygu; Turgut, Deniz; Kalay, Özem; Budak, Gungor; Narcı, Kübra; Arslan, Elif; Brown, Richard; Johnson, Ivan J.; Dolgoborodov, Alexey; Semenyuk, Vladimir; Serhat Tetikol, H.; Jain, A.; Jain, Amit; Tetikol, H. Serhat; Jain, Varun; Ruehle, Mike; Lajoie, Bryan; Roddey, Cooper; Catreux, Severine; Mehio, Rami; Ahsan, Mian Umair; Liu, Qian; Wang, Kai; Ebrahim Sahraeian, Sayed Mohammad; Sahraeian, Sayed Mohammad Ebrahim; Fang, Li Tai; Mohiyuddin, Marghoob; Hung, Calvin; Jain, C.; Jain, Chirag; Feng, Hanying; Li, Zhipan; Che, L.; Chen, Luoqi; Sedlazeck, Fritz J.; Zook, Justin M.

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Nathanael Olson
Olson et al., 2022

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Cell Press, Cell Genomics, 5(2), p. 100129, 2022

DOI: 10.1016/j.xgen.2022.100129

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@article{Olson2022,
  author = {Olson, Nathan D. and Wagner, Justin and McDaniel, Jennifer and Stephens, Sarah H. and Westreich, Samuel T. and Prasanna, Anish G. and Johanson, Elaine and Boja, Emily and Maier, Ezekiel J. and Serang, Omar and Jáspez, David and Lorenzo-Salazar, José M. and Muñoz-Barrera, Adrián and Rubio-Rodríguez, Luis A. and Flores, Carlos and Kyriakidis, Konstantinos and Malousi, Andigoni and Shafin, Kishwar and Pesout, Trevor and Jain, Miten and Jain, M. and Paten, Benedict and Chang, Pi-Chuan and Kolesnikov, Alexey and Nattestad, Maria and Baid, Gunjan and Goel, Sidharth and Yang, Howard and Carroll, Andrew and Eveleigh, Robert and Bourgey, Mathieu and Bourque, Guillaume and Li, Gen and Ma, ChouXian and ChouXian,  and Tang, LinQi and Du, YuanPing and Zhang, ShaoWei and Morata, Jordi and Tonda, Raúl and Parra, Genís and Trotta, Jean-Rémi and Brueffer, Christian and Demirkaya-Budak, Sinem and Kabakci-Zorlu, Duygu and Turgut, Deniz and Kalay, Özem and Budak, Gungor and Narcı, Kübra and Arslan, Elif and Brown, Richard and Johnson, Ivan J. and Dolgoborodov, Alexey and Semenyuk, Vladimir and Serhat Tetikol, H. and Jain, A. and Jain, Amit and Tetikol, H. Serhat and Jain, Varun and Ruehle, Mike and Lajoie, Bryan and Roddey, Cooper and Catreux, Severine and Mehio, Rami and Ahsan, Mian Umair and Liu, Qian and Wang, Kai and Ebrahim Sahraeian, Sayed Mohammad and Sahraeian, Sayed Mohammad Ebrahim and Fang, Li Tai and Mohiyuddin, Marghoob and Hung, Calvin and Jain, C. and Jain, Chirag and Feng, Hanying and Li, Zhipan and Che, L. and Chen, Luoqi and Sedlazeck, Fritz J. and Zook, Justin M.},
  doi = {10.1016/j.xgen.2022.100129},
  journal = {Cell Genomics},
  month = {may},
  pages = {100129},
  title = {PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions},
  url = {https://doi.org/10.1016/j.xgen.2022.100129},
  volume = {2},
  year = {2022}
}

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