Many countries define nativity at a country-level—taxa are categorised as either alien species or native species. However, there are often substantial within-country biogeographical barriers and so a taxon can be native and alien to different parts of the same country. Here, we use the term ‘native-alien populations’ as a short-hand for populations that result from the human-mediated dispersal of individuals of a species beyond a biogeographical barrier to a point beyond that species’ native range, but that is still within the same political entity as parts of the species’ native range. Based on these criteria, we consider native-alien populations to be biological invasions. However, we argue that, in comparison to other alien populations, native-alien populations: 1) are likely to be closer geographically to their native range; 2) are likely to be phylogenetically and ecologically more similar to native species in their introduced range; and 3) options to control their introduction or manage them will likely be more limited. We argue this means native-alien populations tend to differ from other alien populations in the likelihood of invasion, the types of impacts they have, and in how they can be most effectively managed. We also argue that native-alien populations are similarly a distinct phenomenon from native populations that are increasing in abundance or range extent. And note that native-alien populations are expected to be particularly common in large, ecologically diverse countries with disjunct biomes and ecoregions. Reporting, monitoring, regulating and managing native-alien populations will, we believe, become an increasingly important component of managing global change.