Adult caddisflies were collected during 2018 and 2019 from Kožuf and Baba mountains, located in the southern end of the Republic of North Macedonia. A total of 36 species were recorded, of which 22 and 8 were recorded for the first time for Kožuf and Baba mountains, respectively. Limnephilus flavicornis (Fabricius, 1787) is reported for the first time from the country from Kožuf Mountain. In addition, new localities of several rare and endemic caddisfly species were found. The results of this study highlight Kožuf and Baba mountains as refugium for caddisfly species of conservation importance.