Co-composting of raw manure with other organic sources has recently gained the attention of the scientific community. In the present study, raw manure and manures enriched with humic substances (Humac) or biochar were co-composted to improve their physico-chemical properties. We conducted an experiment including variants consisting of soil amended with manure (M), manure + Humac (M + H), manure + biochar (M + B), and unamended (control). Soil physico-chemical, biological, and plant properties were assessed altogether. All matured manures differed from each other physico-chemically (nutrient content) and in microbial composition, and hence their effects on the observed parameters. Compared to control, the soil respiration and enzyme activities related to N and P mineralization were enhanced due to the amendment of either manure or enriched manures. The M + H treatment resulted in higher pH of the manures as compared to other treatments, whereas the M + B and M treatments revealed the highest Corg contents of the final product, which was negatively correlated with HA:FA. In the same manner, M + H and M + B were the most prominent treatments, causing higher variations in basal soil respiration. The same treatments resulted in the highest percent increase values of soil enzymes related to C, N, and P, which further show the potential of manure modification as a viable option to boost soil fertility and health.