Published in
American Society for Microbiology, mSystems, 3(6), 2021
DOI: 10.1128/msystems.00583-21
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METAnnotatorX2: a Comprehensive Tool for Deep and Shallow Metagenomic Data Set Analyses
Journal article published in 2021 by
Christian Milani 
,
Gabriele Andrea Lugli,
Federico Fontana,
Leonardo Mancabelli,
Giulia Alessandri,
Giulia Longhi,
Rosaria Anzalone,
Alice Viappiani,
Francesca Turroni ,
Douwe van Sinderen ,
Marco Ventura
,
Gabriele Andrea Lugli,
Federico Fontana,
Leonardo Mancabelli,
Giulia Alessandri,
Giulia Longhi,
Rosaria Anzalone,
Alice Viappiani,
Francesca Turroni ,
Douwe van Sinderen ,
Marco Ventura
This paper is made freely available by the publisher.
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Abstract
We developed a novel tool, i.e., METAnnotatorX2, that includes a number of new advanced features for analysis of deep and shallow metagenomic data sets and is accompanied by (regularly updated) customized databases for archaea, bacteria, fungi, protists, and viruses. Both software and databases were developed so as to maximize sensitivity and specificity while including support for shallow metagenomic data sets.