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Oxford University Press, Bioinformatics, 8(38), p. 2369-2370, 2022

DOI: 10.1093/bioinformatics/btac097

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SteadyCellPhenotype: a web-based tool for the modeling of biological networks with ternary logic

Journal article published in 2022 by Adam C. Knapp ORCID, Luis Sordo Vieira, Reinhard Laubenbacher, Julia Chifman
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Abstract Summary We introduce SteadyCellPhenotype, a browser-based interface for the analysis of ternary biological networks. It includes tools for deterministically finding all steady states of a network, as well as the simulation and visualization of trajectories with publication quality graphics. Simulations allow us to approximate the size of the basin for attractors and deterministic simulations of trajectories nearby specified points allow us to explore the behavior of the system in that neighborhood. Availability and implementation https://github.com/knappa/steadycellphenotype MIT License.