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Nature Research, Nature Communications, 1(5), 2014

DOI: 10.1038/ncomms5999

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Evidence that breast cancer risk at the 2q35 locus is mediated through IGFBP5 regulation

Journal article published in 2014 by Shu Xo, Nuria Álvarez, Gao Yt, Teo Yy, Koto Yd, Muranen Ta, Maya Ghoussaini, Emiel J. Th Rutgers, Cross Ss, Laura J. Van't Veer, Wong Ty, Kyriaki Michailidou, Stacey L. Edwards, Isabel dos-Santos-Silva, Chen St and other authors.
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

GWAS have identified a breast cancer susceptibility locus on 2q35. Here we report the fine mapping of this locus using data from 101,943 subjects from 50 case-control studies. We genotype 276 SNPs using the 'iCOGS' genotyping array and impute genotypes for a further 1,284 using 1000 Genomes Project data. All but two, strongly correlated SNPs (rs4442975 G/T and rs6721996 G/A) are excluded as candidate causal variants at odds against >100:1. The best functional candidate, rs4442975, is associated with oestrogen receptor positive (ER+) disease with an odds ratio (OR) in Europeans of 0.85 (95% confidence interval=0.84-0.87; P=1.7 x 10(-43)) per t-allele. This SNP flanks a transcriptional enhancer that physically interacts with the promoter of IGFBP5 (encoding insulin-like growth factor-binding protein 5) and displays allele-specific gene expression, FOXA1 binding and chromatin looping. Evidence suggests that the g-allele confers increased breast cancer susceptibility through relative downregulation of IGFBP5, a gene with known roles in breast cell biology. ; Ghoussaini, Maya Edwards, Stacey L Michailidou, Kyriaki Nord, Silje Cowper-Sal Lari, Richard Desai, Kinjal Kar, Siddhartha Hillman, Kristine M Kaufmann, Susanne Glubb, Dylan M Beesley, Jonathan Dennis, Joe Bolla, Manjeet K Wang, Qin Dicks, Ed Guo, Qi Schmidt, Marjanka K Shah, Mitul Luben, Robert Brown, Judith Czene, Kamila Darabi, Hatef Eriksson, Mikael Klevebring, Daniel Bojesen, Stig E Nordestgaard, Borge G Nielsen, Sune F Flyger, Henrik Lambrechts, Diether Thienpont, Bernard Neven, Patrick Wildiers, Hans Broeks, Annegien Van't Veer, Laura J Th Rutgers, Emiel J Couch, Fergus J Olson, Janet E Hallberg, Emily Vachon, Celine Chang-Claude, Jenny Rudolph, Anja Seibold, Petra Flesch-Janys, Dieter Peto, Julian Dos-Santos-Silva, Isabel Gibson, Lorna Nevanlinna, Heli Muranen, Taru A Aittomaki, Kristiina Blomqvist, Carl Hall, Per Li, Jingmei Liu, Jianjun Humphreys, Keith Kang, Daehee Choi, Ji-Yeob Park, Sue K Noh, Dong-Young Matsuo, Keitaro Ito, Hidemi Iwata, Hiroji Yatabe, Yasushi Guenel, Pascal Truong, Therese Menegaux, Florence Sanchez, Marie Burwinkel, Barbara Marme, Frederik Schneeweiss, Andreas Sohn, Christof Wu, Anna H Tseng, Chiu-Chen Van Den Berg, David Stram, Daniel O Benitez, Javier Zamora, M Pilar Perez, Jose Ignacio Arias Menendez, Primitiva Shu, Xiao-Ou Lu, Wei Gao, Yu-Tang Cai, Qiuyin Cox, Angela Cross, Simon S Reed, Malcolm W R Andrulis, Irene L Knight, Julia A Glendon, Gord Tchatchou, Sandrine Sawyer, Elinor J Tomlinson, Ian Kerin, Michael J Miller, Nicola Haiman, Christopher A Henderson, Brian E Schumacher, Fredrick Le Marchand, Loic Lindblom, Annika Margolin, Sara Teo, Soo Hwang Yip, Cheng Har Lee, Daphne S C Wong, Tien Y Hooning, Maartje J Martens, John W M Collee, J Margriet van Deurzen, Carolien H M Hopper, John L Southey, Melissa C Tsimiklis, Helen Kapuscinski, Miroslav K Shen, Chen-Yang Wu, Pei-Ei Yu, Jyh-Cherng Chen, Shou-Tung Alnaes, Grethe Grenaker Borresen-Dale, Anne-Lise Giles, Graham G Milne, Roger L McLean, Catriona Muir, Kenneth Lophatananon, Artitaya Stewart-Brown, Sarah Siriwanarangsan, Pornthep Hartman, Mikael Miao, Hui Buhari, Shaik Ahmad Bin Syed Teo, Yik Ying Fasching, Peter A Haeberle, Lothar Ekici, Arif B Beckmann, Matthias W Brenner, Hermann Dieffenbach, Aida Karina Arndt, Volker Stegmaier, Christa Swerdlow, Anthony Ashworth, Alan Orr, Nick Schoemaker, Minouk J Garcia-Closas, Montserrat Figueroa, Jonine Chanock, Stephen J Lissowska, Jolanta Simard, Jacques Goldberg, Mark S Labreche, France Dumont, Martine Winqvist, Robert Pylkas, Katri Jukkola-Vuorinen, Arja Brauch, Hiltrud Bruning, Thomas Koto, Yon-Dschun Radice, Paolo Peterlongo, Paolo Bonanni, Bernardo Volorio, Sara Dork, Thilo Bogdanova, Natalia V Helbig, Sonja Mannermaa, Arto Kataja, Vesa Kosma, Veli-Matti Hartikainen, Jaana M Devilee, Peter Tollenaar, Robert A E M Seynaeve, Caroline Van Asperen, Christi J Jakubowska, Anna Lubinski, Jan Jaworska-Bieniek, Katarzyna Durda, Katarzyna Slager, Susan Toland, Amanda E Ambrosone, Christine B Yannoukakos, Drakoulis Sangrajrang, Suleeporn Gaborieau, Valerie Brennan, Paul McKay, James Hamann, Ute Torres, Diana Zheng, Wei Long, Jirong Anton-Culver, Hoda Neuhausen, Susan L Luccarini, Craig Baynes, Caroline Ahmed, Shahana Maranian, Mel Healey, Catherine S Gonzalez-Neira, Anna Pita, Guillermo Alonso, M Rosario Alvarez, Nuria Herrero, Daniel Tessier, Daniel C Vincent, Daniel Bacot, Francois de Santiago, Ines Carroll, Jason Caldas, Carlos Brown, Melissa A Lupien, Mathieu Kristensen, Vessela N Pharoah, Paul D P Chenevix-Trench, Georgia French, Juliet D Easton, Douglas F Dunning, Alison M Australian Ovarian Cancer Management Group 16561/Cancer Research UK/United Kingdom England Nature communications Nat Commun. 2014 Sep 23;4:4999. doi: 10.1038/ncomms5999.