Published in

Optica, Optics Express, 22(28), p. 33019, 2020

DOI: 10.1364/oe.402311

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7X multiplexed, optofluidic detection of nucleic acids for antibiotic-resistance bacterial screening

This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Rapid and accurate diagnosis of bacterial infections resistant to multiple antibiotics requires development of new bio-sensors for differentiated detection of multiple targets. This work demonstrates 7x multiplexed detection for antibiotic-resistance bacterial screening on an optofluidic platform. We utilize spectrally multiplexed multi-spot excitation for simultaneous detection of nucleic acid strands corresponding to bacterial targets and resistance genes. This is enabled by multi-mode interference (MMI) waveguides integrated in an optofluidic device. We employ a combinatorial three-color labeling scheme for the nucleic acid assays to scale up their multiplexing capability to seven different nucleic acids, representing three species and four resistance genes.