Successful mitigation of air pollution in large cities requires information about the structure of emission sources and their contribution to total atmospheric load. The presented research demonstrates a possibility of application of isotope tracers for the estimation of contribution of different sources to the carbonaceous fraction of PM2.5 (Particulate Matter containing fraction below 2.5 μm) collected in the urban atmosphere of Krakow, Poland during the summer and winter seasons. Isotope mass balance approach was used to perform source apportionment analysis for those two seasons. The analysis showed that the dominant source of the carbonaceous fraction of PM2.5 in Krakow is coal burning during the winter season and biogenic emissions during the summer season. Sensitivity analysis revealed that the uncertainty of the percentage contribution of different sources to the overall carbon load of the analyzed PM2.5 fraction is in order of a few percent.