Dissemin is shutting down on January 1st, 2025

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Nature Research, Nature Microbiology, 8(5), p. 987-994, 2020

DOI: 10.1038/s41564-020-0733-x

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Roadmap for naming uncultivated Archaea and Bacteria

Journal article published in 2020 by Alison E. Murray ORCID, Paulina Estrada de los Santos, John Freudenstein, Simonetta Gribaldo ORCID, Roland Hatzenpichler ORCID, Philip Hugenholtz ORCID, Peter Kämpfer, Konstantinos T. Konstantinidis, Christopher E. Lane ORCID, R. Thane Papke, R. Thane Papke, Donovan H. Parks ORCID, Ramon Rossello-Mora, Matthew B. Stott ORCID, Iain C. Sutcliffe and other authors.
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Data provided by SHERPA/RoMEO

Abstract

AbstractThe assembly of single-amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea and Bacteria, bringing with it a need to develop guidelines for nomenclature of uncultivated microorganisms. The International Code of Nomenclature of Prokaryotes (ICNP) only recognizes cultures as ‘type material’, thereby preventing the naming of uncultivated organisms. In this Consensus Statement, we propose two potential paths to solve this nomenclatural conundrum. One option is the adoption of previously proposed modifications to the ICNP to recognize DNA sequences as acceptable type material; the other option creates a nomenclatural code for uncultivated Archaea and Bacteria that could eventually be merged with the ICNP in the future. Regardless of the path taken, we believe that action is needed now within the scientific community to develop consistent rules for nomenclature of uncultivated taxa in order to provide clarity and stability, and to effectively communicate microbial diversity.