Macromolecular modeling and design in Rosetta: recent methods and frameworks

Leman, Julia Koehler; Weitzner, Brian D.; Lewis, Steven M.; Adolf-Bryfogle, Jared; Alam, Nawsad; Alford, Rebecca F.; Aprahamian, Melanie; Baker, David; Barlow, Kyle A.; Barth, Patrick; Basanta, Benjamin; Bender, Brian J.; Blacklock, Kristin; Bonet, Jaume; Boyken, Scott E.; Bradley, Phil; Bystroff, Chris; Conway, Patrick; Cooper, Seth; Correia, Bruno E.; Coventry, Brian; Das, Rhiju; De Jong, René M.; DiMaio, Frank; Dsilva, Lorna; Dunbrack, Roland; Ford, Alexander S.; Frenz, Brandon; Fu, Darwin Y.; Geniesse, Caleb; Goldschmidt, Lukasz; Gowthaman, Ragul; Gray, Jeffrey J.; Gront, Dominik; Guffy, Sharon; Horowitz, Scott; Huang, Po-Ssu; Huber, Thomas; Jacobs, Tim M.; Jeliazkov, Jeliazko R.; Johnson, David K.; Kappel, Kalli; Karanicolas, John; Khakzad, Hamed; Khar, Karen R.; Khare, Sagar D.; Khatib, Firas; Khramushin, Alisa; King, Indigo C.; Kleffner, Robert; Koepnick, Brian; Kortemme, Tanja; Kuenze, Georg; Kuhlman, Brian; Kuroda, Daisuke; Labonte, Jason W.; Lai, Jason K.; Lapidoth, Gideon; Leaver-Fay, Andrew; Lindert, Steffen; Linsky, Thomas; London, Nir; Lubin, Joseph H.; Lyskov, Sergey; Maguire, Jack; Malmström, Lars; Marcos, Enrique; Marcu, Orly; Marze, Nicholas A.; Meiler, Jens; Moretti, Rocco; Mulligan, Vikram Khipple; Nerli, Santrupti; Norn, Christoffer; Ó’Conchúir, Shane; Ollikainen, Noah; Ovchinnikov, Sergey; Pacella, Michael S.; Pan, Xingjie; Park, Hahnbeom; Pavlovicz, Ryan E.; Pethe, Manasi; Pierce, Brian G.; Pilla, Kala Bharath; Raveh, Barak; Renfrew, P. Douglas; Burman, Shourya S. Roy; Rubenstein, Aliza; Sauer, Marion F.; Scheck, Andreas; Schief, William; Schueler-Furman, Ora; Sedan, Yuval; Sevy, Alexander M.; Sgourakis, Nikolaos G.; Shi, Lei; Siegel, Justin B.; Silva, Daniel-Adriano; Smith, Shannon; Song, Yifan; Stein, Amelie; Szegedy, Maria; Teets, Frank D.; Thyme, Summer B.; Wang, Ray Yu-Ruei; Watkins, Andrew; Zimmerman, Lior; Bonneau, Richard

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Julia Koehler Leman
Leman et al., 2020

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Nature Research, Nature Methods, 7(17), p. 665-680, 2020

DOI: 10.1038/s41592-020-0848-2

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@article{Leman2020,
  author = {Leman, Julia Koehler and Weitzner, Brian D. and Lewis, Steven M. and Adolf-Bryfogle, Jared and Alam, Nawsad and Alford, Rebecca F. and Aprahamian, Melanie and Baker, David and Barlow, Kyle A. and Barth, Patrick and Basanta, Benjamin and Bender, Brian J. and Blacklock, Kristin and Bonet, Jaume and Boyken, Scott E. and Bradley, Phil and Bystroff, Chris and Conway, Patrick and Cooper, Seth and Correia, Bruno E. and Coventry, Brian and Das, Rhiju and De Jong, René M. and DiMaio, Frank and Dsilva, Lorna and Dunbrack, Roland and Ford, Alexander S. and Frenz, Brandon and Fu, Darwin Y. and Geniesse, Caleb and Goldschmidt, Lukasz and Gowthaman, Ragul and Gray, Jeffrey J. and Gront, Dominik and Guffy, Sharon and Horowitz, Scott and Huang, Po-Ssu and Huber, Thomas and Jacobs, Tim M. and Jeliazkov, Jeliazko R. and Johnson, David K. and Kappel, Kalli and Karanicolas, John and Khakzad, Hamed and Khar, Karen R. and Khare, Sagar D. and Khatib, Firas and Khramushin, Alisa and King, Indigo C. and Kleffner, Robert and Koepnick, Brian and Kortemme, Tanja and Kuenze, Georg and Kuhlman, Brian and Kuroda, Daisuke and Labonte, Jason W. and Lai, Jason K. and Lapidoth, Gideon and Leaver-Fay, Andrew and Lindert, Steffen and Linsky, Thomas and London, Nir and Lubin, Joseph H. and Lyskov, Sergey and Maguire, Jack and Malmström, Lars and Marcos, Enrique and Marcu, Orly and Marze, Nicholas A. and Meiler, Jens and Moretti, Rocco and Mulligan, Vikram Khipple and Nerli, Santrupti and Norn, Christoffer and Ó’Conchúir, Shane and Ollikainen, Noah and Ovchinnikov, Sergey and Pacella, Michael S. and Pan, Xingjie and Park, Hahnbeom and Pavlovicz, Ryan E. and Pethe, Manasi and Pierce, Brian G. and Pilla, Kala Bharath and Raveh, Barak and Renfrew, P. Douglas and Burman, Shourya S. Roy and Rubenstein, Aliza and Sauer, Marion F. and Scheck, Andreas and Schief, William and Schueler-Furman, Ora and Sedan, Yuval and Sevy, Alexander M. and Sgourakis, Nikolaos G. and Shi, Lei and Siegel, Justin B. and Silva, Daniel-Adriano and Smith, Shannon and Song, Yifan and Stein, Amelie and Szegedy, Maria and Teets, Frank D. and Thyme, Summer B. and Wang, Ray Yu-Ruei and Watkins, Andrew and Zimmerman, Lior and Bonneau, Richard},
  doi = {10.1038/s41592-020-0848-2},
  journal = {Nature Methods},
  month = {jun},
  pages = {665-680},
  title = {Macromolecular modeling and design in Rosetta: recent methods and frameworks},
  url = {http://www.nature.com/articles/s41592-020-0848-2.pdf},
  volume = {17},
  year = {2020}
}

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