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Published in

National Academy of Sciences, Proceedings of the National Academy of Sciences, 43(115), p. 10965-10970, 2018

DOI: 10.1073/pnas.1810054115

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Protein shape modulates crowding effects

This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Significance Macromolecular crowding influences protein−protein interactions via hard-core repulsions and chemical interactions. Scaled particle theory predicts that the effect of hard-core repulsions depends on the shape of the protein complex, and simple ideas about chemical interactions predict a dominant role for the chemical qualities of the protein surface. The theory predicts that a collapsed, ellipsoidal, dimer will be stabilized by hard-core repulsions, whereas a less collapsed, side-by-side, dimer will not. We applied scaled particle theory to two dimers with nearly identical surfaces but different shapes. Our results support the predictions; crowders that interact primarily through hard-core repulsions stabilize the ellipsoidal domain-swapped dimer more than the side-by-side dimer, whereas crowders that interact via chemical interactions have the same effect on both dimers.