The toxicity of quantum dots (QDs) has been commonly attributed to the release of metal ions from the core as well as to the production of reactive oxygen species. However, the information related to the stability of the nanoparticles are relatively scarce although this parameter may strongly influence their toxicity. The stability of aminosilane-capped ZnO QDs, here used as model nanoparticles, was investigated by inductively coupled plasma-optical emission spectrometer (ICP-OES) and whole cell biosensors using a dialysis setup to separate the QDs from the leaked Zn2+ ions. The integrity of the ZnO QDs appeared strongly affected by their dilution in aqueous medium, whereas the nanoparticles were slightly stabilized by bacteria. Our results demonstrate some inadequacy between the implementation and use of whole cell biosensors, and the monitoring of metal release from QDs.