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Oxford University Press, Nucleic Acids Research, 21(39), p. 9448-9457, 2011

DOI: 10.1093/nar/gkr539

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Stacking of G-quadruplexes: NMR structure of a G-rich oligonucleotide with potential anti-HIV and anticancer activity†

Journal article published in 2011 by Ngoc Quang Do, Kah Wai Lim, Ming Hoon Teo, Brahim Heddi, Anh Tuân Phan ORCID
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

G-rich oligonucleotides T30695 (or T30923), with the sequence of (GGGT)(4), and T40214, with the sequence of (GGGC)(4), have been reported to exhibit anti-HIV and anticancer activity. Here we report on the structure of a dimeric G-quadruplex adopted by a derivative of these sequences in K(+) solution. It comprises two identical propeller-type parallel-stranded G-quadruplex subunits each containing three G-tetrad layers that are stacked via the 5'-5' interface. We demonstrated control over the stacking of the two monomeric subunits by sequence modifications. Our analysis of possible structures at the stacking interface provides a general principle for stacking of G-quadruplexes, which could have implications for the assembly and recognition of higher-order G-quadruplex structures.