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GOToolBox: functional analysis of gene datasets based on Gene Ontology.

Journal article published in 2004 by David Martin, Christine Brun, Elisabeth Remy, Pierre Mouren, Bernard Jacq, Denis Thieffry
This paper is available in a repository.
This paper is available in a repository.

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Abstract

Abstract We have developed methods and tools based on the Gene Ontology (GO) resource allowing the identification of statistically over- or under-represented terms in a gene dataset; the clustering of functionally related genes within a set; and the retrieval of genes sharing annotations with a query gene. GO annotations can also be constrained to a slim hierarchy or a given level of the ontology. The source codes are available upon request, and distributed under the GPL license.