Published in

International Union of Crystallography, Acta Crystallographica Section F: Structural Biology Communications, 9(75), p. 616-624, 2019

DOI: 10.1107/s2053230x19011488

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Structure of the dihydrolipoamide succinyltransferase catalytic domain fromEscherichia coliin a novel crystal form: a tale of a common protein crystallization contaminant

This paper was not found in any repository, but could be made available legally by the author.
This paper was not found in any repository, but could be made available legally by the author.

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Abstract

The crystallization of amidase, the ultimate enzyme in the Trp-dependent auxin-biosynthesis pathway, fromArabidopsis thalianawas attempted using protein samples with at least 95% purity. Cube-shaped crystals that were assumed to be amidase crystals that belonged to space groupI4 (unit-cell parametersa=b= 128.6,c= 249.7 Å) were obtained and diffracted to 3.0 Å resolution. Molecular replacement using structures from the PDB containing the amidase signature fold as search models was unsuccessful in yielding a convincing solution. Using theSequence-Independent Molecular replacement Based on Available Databases(SIMBAD) program, it was discovered that the structure corresponded to dihydrolipoamide succinyltransferase fromEscherichia coli(PDB entry 1c4t), which is considered to be a common crystallization contaminant protein. The structure was refined to anRworkof 23.0% and anRfreeof 27.2% at 3.0 Å resolution. The structure was compared with others of the same protein deposited in the PDB. This is the first report of the structure of dihydrolipoamide succinyltransferase isolated without an expression tag and in this novel crystal form.