This paper summarizes results from a half-year sampling campaign in Budapest, when Danube River water and bank filtrate were analyzed for 36 emerging micropollutants. Twelve micropollutants were detected regularly in both river water and bank filtrate. Bisphenol A, carbamazepine, and sulfamethoxazole showed low removal (<20%) during bank filtration on Szentendre Island and Csepel island, whereas 1H-benzotriazole, tolyltriazole, diclofenac, cefepime, iomeprol, metazachlor, and acesulfame showed medium to high removal rates of up to 78%. The concentration range in bank filtrate was much lower compared to river water, proving the equilibration effect of bank filtration for water quality.