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Oxford University Press, Bioinformatics, 24(35), p. 5315-5317, 2019

DOI: 10.1093/bioinformatics/btz572

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Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit

Journal article published in 2019 by Maurits J. J. Dijkstra ORCID, Atze J. van der Ploeg, K. Anton Feenstra, Wan J. Fokkink, Sanne Abeln ORCID, Jaap Heringa
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Abstract Summary PRALINE 2 is a toolkit for custom multiple sequence alignment workflows. It can be used to incorporate sequence annotations, such as secondary structure or (DNA) motifs, into the alignment scoring, as well as to customize many other aspects of a progressive multiple alignment workflow. Availability and implementation PRALINE 2 is implemented in Python and available as open source software on GitHub: https://github.com/ibivu/PRALINE/.