F1000Research, F1000Research, (8), p. 145, 2020
DOI: 10.12688/f1000research.17927.4
F1000Research, F1000Research, (8), p. 145, 2020
DOI: 10.12688/f1000research.17927.3
F1000Research, F1000Research, (8), p. 145
DOI: 10.12688/f1000research.17927.2
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Biobtree is a bioinformatics tool to search and map bioinformatics datasets via identifiers or special keywords such as species name. It processes large bioinformatics datasets using a specialized MapReduce-based solution with optimum computational and storage resource usage. It provides uniform and B+ tree-based database output, a web interface, web services and allows performing chain mapping queries between datasets. It can be used via a single executable file or alternatively it can be used via the R or Python-based wrapper packages which are additionally provided for easier integration into existing pipelines. Biobtree is open source and available at GitHub.