A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

Myers, Richard M.; Zhang, Zhengdong; Stamatoyannopoulos, John; Snyder, Michael; Wold, Barbara; Snyder, M.; Wang, L.; Wang, Li; Wold, B.; Shoresh, Noam; Song, Lingyun; Zhang, Xiaolan; Wang, Tianyuan; Truong, Thanh; Ward, Lucas D.; Wang, T.; Zaleski, Christopher; Schlesinger, Felix; Wang, Hao; Ucla, Catherine; Tilgner, Hagen; Slifer, Teri; Takahashi, Hazuki; Yang, Xinqiong; Myers, R. M.; Wang, Ting; Sotirova, Vihra; Stamatoyannopoulos, John A.; Gingeras, T. R.; Shahab, Atif; Kent, W. J.; Hardison, R. C.; Wei, Chia-Lin; Sheffield, Nathan C.; Mikkelsen, Tarjei S.; Shibata, Yoichiro; Vales, Teresa; Kheradpour, P.; Issner, Robbyn; Winter, Deborah; Zhang, Zhancheng; Ku, Manching; Song, L.; Wang, Jing; Weng, Zhiping; Lin, Michael F.; Kellis, M.; Kapranov, Philipp; Epstein, Charles B.; Showers, Kimberly A.; Sprouse, Rebekka O.; Shestak, Christopher; Ernst, J.; Jha, Sonali; Varley, Katherine E.; Lin, W.; Gao, Hui; Waite, Lindsay L.; Thibeault, Krista; Williams, Brian; Lagarde, Julien; Trout, Diane; Guigo, R.; Kingswood, Colin; Ribeca, Paolo; Sammeth, Micha; Hardison, Ross C.; Gingeras, Thomas R.; Merkel, Angelika; Kent, W. James; Kheradpour, Pouya; Vielmetter, Jost; Hayashizaki, Yoshihide; Sherlock, Gavin; Lassmann, Timo; Kellis, Manolis; Sidow, Arend; Hannon, Gregory; Lin, Wei; Preall, Jonathan; Guigo, Roderic; Gordon, Assaf; Searle, Stephen; Ruan, Yijun; Reymond, Alexandre; Reymond, A.; Ruan, Xiaoan; Howald, Cedric; Howald, C.; Graison, Emilie Ait Yahya; Poh, Wan Ting; van Baren, M. J.; Graison, E. A. Y.; Furey, Terrence S.; Keefe, Damian; Partridge, E. Christopher; Parker, Stephanie L.; Tanzer, Andrea; London, Darin; Iyer, Vishwanath R.; Valencia, Alfonso; Tress, Michael; Lee, Bum-Kyu; McDaniell, Ryan M.; Shi, Minyi; Liu, Zheng; Jain, Preti; Parker, Stephen C. J.; Pusey, Barbara; Lieb, Jason D.; Xu, Youhan; Muratet, Michael A.; Grasfeder, Linda L.; Keefe, D.; Gerstein, Mark; Newberry, Kimberly M.; Giresi, Paul G.; Wu, Linfeng; Nesmith, Amy S.; Kim, Seul K. C.; Slifer, T.; Yang, X.; Parker, S. L.; Pauli, Florencia; Weissman, Sherman M.; Reddy, Timothy E.; Struhl, Kevin; Roberts, Kevin; Gertz, Jason; Mortazavi, Ali; Marinov, Georgi; Haussler, David; Xu, Xiaoqin; Wang, Huaien; King, Brandon; McCue, Kenneth; Partridge, E. C.; Thurman, Robert E.; Kirilusha, Anthony; Rodriguez, J. M.; Weaver, Molly; Pepke, Shirley; Landt, Stephen G.; Rauch, Rami; Vong, Shinny; Kundaje, Anshul; Manuel Rodriguez, Jose; Libbrecht, Max; Margulies, Elliott H.; Sheffer, Hadar H.; Parker, S. C. J.; Green, Eric D.; Hubbard, Tim; Shafer, Tony; Harrow, Jennifer; Kokocinski, Felix; Patacsil, Dorrelyn; Zweig, Ann S.; Hunt, Toby; Kay, Mike; Sloan, Cricket A.; Mukherjee, Gaurab; Swing, Vanessa K.; Habegger, Lukas; Khurana, Ekta; Wilder, Steven P.; Rozowsky, Joel; Sobral, Daniel; Lam, Hugo; Gerstein, M.; Robilotto, Rebecca; Frankish, Adam; Lu, Zhi; Vaquerizas, Juan M.; Knowles, David G.; Mariotti, Marco; Sboner, Andrea; Harte, Rachel; Yip, Kevin Y.; Lin, Mike; Yan, Koon-Kiu; Johnson, Ericka M.; Haussler, D.; Wang, J.; Raha, Debasish; Grubert, Fabian; Kasowski, Maya; Song, Giltae; Lian, Jin; Lajoie, Bryan R.; Suh, Bernard; Lacroute, Phil; Sanyal, Amartya; Monahan, Hannah; Wang, Jie; Landt, S. G.; Saunders, Gary; Weng, Z.; Xi, Hualin; Tenenbaum, Scott A.; Reed, Brian; Roskin, Krishna; Tullius, Thomas D.; Hariharan, Manoj; White, Kevin P.; Victorsen, Alec; Patacsil, D.; Euskirchen, Ghia; Lamarre-Vincent, Nathan; Habegger, L.; Miotto, Benoit; Trinklein, Nathan D.; Lindahl-Allen, Marianne; Rozowsky, J.; Moqtaderi, Zarmik; Whitfield, Troy W.; Newburger, Peter; Yu, Yanbao; O'Geen, Henriette; Iyengar, Sushma; Kaul, Rajinder; Navas, Patrick A.; Sandstrom, Richard; Sabo, Peter J.; Fleming, Joseph D.; Lee, Kristen; Farnham, Peggy J.; Neph, Shane; Roach, Vaughan; Frietze, Seth; Reynolds, Alex; Johnson, Audra; Rynes, Eric; Giste, Erika; Neri, Jun; Nguyen, Eric D.; Sanchez, Minerva E.; Lotakis, Dimitra; Haugen, Eric; Humbert, Richard; Kutyavin, Tanya; Rosenbloom, Kate R.; Noble, William S.; Frum, Tristan; Raney, Brian J.; Ernst, Jason; Meyer, Laurence R.; Lajoie, B. R.; Sanyal, A.; Malladi, Venkat S.; Fejes-Toth, Katalin; Learned, Katrina; Rhead, Brooke; Fujita, Pauline A.; Karolchik, Donna; Fisher-Aylor, Katherine; Roskin, K.; Kuhn, Robert M.; Herrero, Javier; Lukk, Margus; Luscombe, Nicholas M.; Li, Qunhua; Huang, Haiyan; Lochovsky, Lucas; Jee, Justin; Gibson, Theodore; Leng, Jing; Harris, Robert S.; Miller, Webb; Paten, Benedict; Hoffman, Michael M.; Penalva, Luiz O.; Karmakar, Subhradip; Jameel, Nader; Grossman, Robert L.; Giddings, Morgan C.; Khatun, Jainab; Maier, Chris; Gunawardena, Harsha; Lowdon, Rebecca F.; Feingold, Elise A.; Good, Peter J.; Risk, Brian; Bernstein, B. E.; Dunham, I.; Birney, E.; Crawford, G. E.; Coyne, Michael J.; Durham, Timothy; Davis, Carrie A.; Dobin, Alexander; Altshuler, Robert Charles; Batut, Philippe; Chakrabortty, Sudipto; Drenkow, Jorg; Bell, Kim; Bell, Ian; Dumais, Erica; Dumais, Jacqueline; Antonarakis, Stylianos E.; Borel, Christelle; Djebali, Sarah; Alioto, Tyler; Carninci, Piero; Abdelhamid, Rehab F.; Chrast, J.; Boyle, Alan P.; Battenhouse, Anna; Bhinge, Akshay A.; Bansal, Anita; Bowling, Kevin M.; Dilocker, Jason A.; Absher, Devin M.; DeSalvo, Gilberto; Amrhein, Henry; Batzoglou, Serafim; Elnitski, Laura; Despacio-Reyes, Gloria; Aken, Browen; Bignell, Alexandra; Boychenko, Veronika; Brent, Michael; Brown, Randall H.; Balasubramanian, Suganthi; Cayting, P.; Derrien, Thomas; Diekhans, Mark; Charos, Alexandra; Auerbach, R. K.; Abyzov, Alexej; Blahnik, Kim R.; Cao, Alina R.; Canfield, Theresa; Ebersol, Abigail K.; Dekker, J.; Dreszer, Timothy R.; Barber, Galt P.; Cline, Melissa S.; Beal, Kathryn; Brazma, Alvis; Bickel, Peter J.; Boley, Nathan; Brown, James B.; Cheng, Chao; Bhardwaj, Nitin; Dunham, Ian; Bernstein, Bradley E.; Du, Jiang; Birney, Ewan; Crawford, Gregory E.; Buske, Orion J.; Dong, Xianjun; Chrast, Jacqueline; Doyle, Frank; Chittur, Sridar; Bild, Nick; Cayting, Philip; Collins, Patrick J.; Auerbach, Raymond K.; Chen, Xian; Dekker, Job; Dillon, Laura A. L.; Encode, Project Consortium

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Daniel Sobral
Myers et al., 2011

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@article{Myers2011,
  author = {Myers, Richard M. and Zhang, Zhengdong and Stamatoyannopoulos, John and Snyder, Michael and Wold, Barbara and Snyder, M. and Wang, L. and Wang, Li and Wold, B. and Shoresh, Noam and Song, Lingyun and Zhang, Xiaolan and Wang, Tianyuan and Truong, Thanh and Ward, Lucas D. and Wang, T. and Zaleski, Christopher and Schlesinger, Felix and Wang, Hao and Ucla, Catherine and Tilgner, Hagen and Slifer, Teri and Takahashi, Hazuki and Yang, Xinqiong and Myers, R. M. and Wang, Ting and Sotirova, Vihra and Stamatoyannopoulos, John A. and Gingeras, T. R. and Shahab, Atif and Kent, W. J. and Hardison, R. C. and Wei, Chia-Lin and Sheffield, Nathan C. and Mikkelsen, Tarjei S. and Shibata, Yoichiro and Vales, Teresa and Kheradpour, P. and Issner, Robbyn and Winter, Deborah and Zhang, Zhancheng and Ku, Manching and Song, L. and Wang, Jing and Weng, Zhiping and Lin, Michael F. and Kellis, M. and Kapranov, Philipp and Epstein, Charles B. and Showers, Kimberly A. and Sprouse, Rebekka O. and Shestak, Christopher and Ernst, J. and Jha, Sonali and Varley, Katherine E. and Lin, W. and Gao, Hui and Waite, Lindsay L. and Thibeault, Krista and Williams, Brian and Lagarde, Julien and Trout, Diane and Guigo, R. and Kingswood, Colin and Ribeca, Paolo and Sammeth, Micha and Hardison, Ross C. and Gingeras, Thomas R. and Merkel, Angelika and Kent, W. James and Kheradpour, Pouya and Vielmetter, Jost and Hayashizaki, Yoshihide and Sherlock, Gavin and Lassmann, Timo and Kellis, Manolis and Sidow, Arend and Hannon, Gregory and Lin, Wei and Preall, Jonathan and Guigo, Roderic and Gordon, Assaf and Searle, Stephen and Ruan, Yijun and Reymond, Alexandre and Reymond, A. and Ruan, Xiaoan and Howald, Cedric and Howald, C. and Graison, Emilie Ait Yahya and Poh, Wan Ting and van Baren, M. J. and Graison, E. A. Y. and Furey, Terrence S. and Keefe, Damian and Partridge, E. Christopher and Parker, Stephanie L. and Tanzer, Andrea and London, Darin and Iyer, Vishwanath R. and Valencia, Alfonso and Tress, Michael and Lee, Bum-Kyu and McDaniell, Ryan M. and Shi, Minyi and Liu, Zheng and Jain, Preti and Parker, Stephen C. J. and Pusey, Barbara and Lieb, Jason D. and Xu, Youhan and Muratet, Michael A. and Grasfeder, Linda L. and Keefe, D. and Gerstein, Mark and Newberry, Kimberly M. and Giresi, Paul G. and Wu, Linfeng and Nesmith, Amy S. and Kim, Seul K. C. and Slifer, T. and Yang, X. and Parker, S. L. and Pauli, Florencia and Weissman, Sherman M. and Reddy, Timothy E. and Struhl, Kevin and Roberts, Kevin and Gertz, Jason and Mortazavi, Ali and Marinov, Georgi and Haussler, David and Xu, Xiaoqin and Wang, Huaien and King, Brandon and McCue, Kenneth and Partridge, E. C. and Thurman, Robert E. and Kirilusha, Anthony and Rodriguez, J. M. and Weaver, Molly and Pepke, Shirley and Landt, Stephen G. and Rauch, Rami and Vong, Shinny and Kundaje, Anshul and Manuel Rodriguez, Jose and Libbrecht, Max and Margulies, Elliott H. and Sheffer, Hadar H. and Parker, S. C. J. and Green, Eric D. and Hubbard, Tim and Shafer, Tony and Harrow, Jennifer and Kokocinski, Felix and Patacsil, Dorrelyn and Zweig, Ann S. and Hunt, Toby and Kay, Mike and Sloan, Cricket A. and Mukherjee, Gaurab and Swing, Vanessa K. and Habegger, Lukas and Khurana, Ekta and Wilder, Steven P. and Rozowsky, Joel and Sobral, Daniel and Lam, Hugo and Gerstein, M. and Robilotto, Rebecca and Frankish, Adam and Lu, Zhi and Vaquerizas, Juan M. and Knowles, David G. and Mariotti, Marco and Sboner, Andrea and Harte, Rachel and Yip, Kevin Y. and Lin, Mike and Yan, Koon-Kiu and Johnson, Ericka M. and Haussler, D. and Wang, J. and Raha, Debasish and Grubert, Fabian and Kasowski, Maya and Song, Giltae and Lian, Jin and Lajoie, Bryan R. and Suh, Bernard and Lacroute, Phil and Sanyal, Amartya and Monahan, Hannah and Wang, Jie and Landt, S. G. and Saunders, Gary and Weng, Z. and Xi, Hualin and Tenenbaum, Scott A. and Reed, Brian and Roskin, Krishna and Tullius, Thomas D. and Hariharan, Manoj and White, Kevin P. and Victorsen, Alec and Patacsil, D. and Euskirchen, Ghia and Lamarre-Vincent, Nathan and Habegger, L. and Miotto, Benoit and Trinklein, Nathan D. and Lindahl-Allen, Marianne and Rozowsky, J. and Moqtaderi, Zarmik and Whitfield, Troy W. and Newburger, Peter and Yu, Yanbao and O'Geen, Henriette and Iyengar, Sushma and Kaul, Rajinder and Navas, Patrick A. and Sandstrom, Richard and Sabo, Peter J. and Fleming, Joseph D. and Lee, Kristen and Farnham, Peggy J. and Neph, Shane and Roach, Vaughan and Frietze, Seth and Reynolds, Alex and Johnson, Audra and Rynes, Eric and Giste, Erika and Neri, Jun and Nguyen, Eric D. and Sanchez, Minerva E. and Lotakis, Dimitra and Haugen, Eric and Humbert, Richard and Kutyavin, Tanya and Rosenbloom, Kate R. and Noble, William S. and Frum, Tristan and Raney, Brian J. and Ernst, Jason and Meyer, Laurence R. and Lajoie, B. R. and Sanyal, A. and Malladi, Venkat S. and Fejes-Toth, Katalin and Learned, Katrina and Rhead, Brooke and Fujita, Pauline A. and Karolchik, Donna and Fisher-Aylor, Katherine and Roskin, K. and Kuhn, Robert M. and Herrero, Javier and Lukk, Margus and Luscombe, Nicholas M. and Li, Qunhua and Huang, Haiyan and Lochovsky, Lucas and Jee, Justin and Gibson, Theodore and Leng, Jing and Harris, Robert S. and Miller, Webb and Paten, Benedict and Hoffman, Michael M. and Penalva, Luiz O. and Karmakar, Subhradip and Jameel, Nader and Grossman, Robert L. and Giddings, Morgan C. and Khatun, Jainab and Maier, Chris and Gunawardena, Harsha and Lowdon, Rebecca F. and Feingold, Elise A. and Good, Peter J. and Risk, Brian and Bernstein, B. E. and Dunham, I. and Birney, E. and Crawford, G. E. and Coyne, Michael J. and Durham, Timothy and Davis, Carrie A. and Dobin, Alexander and Altshuler, Robert Charles and Batut, Philippe and Chakrabortty, Sudipto and Drenkow, Jorg and Bell, Kim and Bell, Ian and Dumais, Erica and Dumais, Jacqueline and Antonarakis, Stylianos E. and Borel, Christelle and Djebali, Sarah and Alioto, Tyler and Carninci, Piero and Abdelhamid, Rehab F. and Chrast, J. and Boyle, Alan P. and Battenhouse, Anna and Bhinge, Akshay A. and Bansal, Anita and Bowling, Kevin M. and Dilocker, Jason A. and Absher, Devin M. and DeSalvo, Gilberto and Amrhein, Henry and Batzoglou, Serafim and Elnitski, Laura and Despacio-Reyes, Gloria and Aken, Browen and Bignell, Alexandra and Boychenko, Veronika and Brent, Michael and Brown, Randall H. and Balasubramanian, Suganthi and Cayting, P. and Derrien, Thomas and Diekhans, Mark and Charos, Alexandra and Auerbach, R. K. and Abyzov, Alexej and Blahnik, Kim R. and Cao, Alina R. and Canfield, Theresa and Ebersol, Abigail K. and Dekker, J. and Dreszer, Timothy R. and Barber, Galt P. and Cline, Melissa S. and Beal, Kathryn and Brazma, Alvis and Bickel, Peter J. and Boley, Nathan and Brown, James B. and Cheng, Chao and Bhardwaj, Nitin and Dunham, Ian and Bernstein, Bradley E. and Du, Jiang and Birney, Ewan and Crawford, Gregory E. and Buske, Orion J. and Dong, Xianjun and Chrast, Jacqueline and Doyle, Frank and Chittur, Sridar and Bild, Nick and Cayting, Philip and Collins, Patrick J. and Auerbach, Raymond K. and Chen, Xian and Dekker, Job and Dillon, Laura A. L. and Encode, Project Consortium},
  month = {jan},
  title = {A User's Guide to the Encyclopedia of DNA Elements (ENCODE)},
  year = {2011}
}

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