National Academy of Sciences, Proceedings of the National Academy of Sciences, 17(116), p. 8515-8524, 2019
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The global atmospheric level of methane (CH 4 ), the second most important greenhouse gas, is currently increasing by ∼10 million tons per year. Microbial oxidation in unsaturated soils is the only known biological process that removes CH 4 from the atmosphere, but so far, bacteria that can grow on atmospheric CH 4 have eluded all cultivation efforts. In this study, we have isolated a pure culture of a bacterium, strain MG08 that grows on air at atmospheric concentrations of CH 4 [1.86 parts per million volume (p.p.m.v.)]. This organism, named Methylocapsa gorgona , is globally distributed in soils and closely related to uncultured members of the upland soil cluster α. CH 4 oxidation experiments and 13 C-single cell isotope analyses demonstrated that it oxidizes atmospheric CH 4 aerobically and assimilates carbon from both CH 4 and CO 2 . Its estimated specific affinity for CH 4 (a 0 s ) is the highest for any cultivated methanotroph. However, growth on ambient air was also confirmed for Methylocapsa acidiphila and Methylocapsa aurea , close relatives with a lower specific affinity for CH 4 , suggesting that the ability to utilize atmospheric CH 4 for growth is more widespread than previously believed. The closed genome of M. gorgona MG08 encodes a single particulate methane monooxygenase, the serine cycle for assimilation of carbon from CH 4 and CO 2 , and CO 2 fixation via the recently postulated reductive glycine pathway. It also fixes dinitrogen and expresses the genes for a high-affinity hydrogenase and carbon monoxide dehydrogenase, suggesting that atmospheric CH 4 oxidizers harvest additional energy from oxidation of the atmospheric trace gases carbon monoxide (0.2 p.p.m.v.) and hydrogen (0.5 p.p.m.v.).