Dissemin is shutting down on January 1st, 2025

Published in

Elsevier, Biophysical Journal, 3(85), p. 1817-1825, 2003

DOI: 10.1016/s0006-3495(03)74610-4

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Transport of Nucleosome Core Particles in Semidilute DNA Solutions

Journal article published in 2003 by Stéphanie Mangenot ORCID, Simon Keller, Joachim Rädler
This paper is available in a repository.
This paper is available in a repository.

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Abstract

We studied the diffusion of native and trypsinized nucleosome core particles (NCPs), in aqueous solution and in concentrated DNA solutions (0.25–100 mg/ml) using fluorescence correlation spectroscopy (FCS). The highest DNA concentrations studied mimic the DNA density inside the cell nucleus. The diffusion coefficient of freely diffusing NCPs depends on the presence or absence of histone tails and is affected by the salt concentration due to the relaxation effect of counterions. NCPs placed in a network of long DNA molecules (30–50 kbp) reveal anomalous diffusion. We demonstrate that NCPs diffusion is in agreement with known particle transport in entangled macromolecular solutions as long as the histone tails are folded onto the particles. In contrast, when these tails are unfolded, the reversible adsorption of NCPs onto the DNA network has to be taken into account. This is confirmed by the fact that removal of the tails leads to reduction of the interaction between NCPs and the DNA network. The findings suggest that histone tail bridging plays an important role in chromatin dynamics.