Although it is clear that gap thinning significantly increases the soil water content (SWC) of the topsoil, less is known about whether and how this treatment affects deeper layers. From December 2008 to April 2012, we monitored the SWC at depths of 10, 20, 30, 45, 60, and 90 cm in gap creation treatments (small gap size of 30 m², intermediate gap size of 80 m², and unthinned plots) in a typical pine plantation in the eastern Tibetan Plateau. Among gap treatments, differences in SWC and its coefficient of variation (CV) at each depth and the soil water content proportion (SWCP) of the whole soil profile at specific depths were compared. Gap thinning improved SWC and decreased the CV at each depth. The SWCPs in thinned plots were lower at depths from 10 to 30 cm compared with unthinned plots but higher at depths of 45 and 60 cm. Also, in each season, the patterns were similar to the general results. In conclusion, gap thinning improves the SWC, changes the vertical soil water distribution, and decreases the SWC heterogeneity. The soil water conditions in intermediate gaps are more appropriate for local forest restoration.