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European Geosciences Union, Biogeosciences, 20(11), p. 5865-5875, 2014

DOI: 10.5194/bg-11-5865-2014

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Methanotrophic activity and diversity of methanotrophs in volcanic geothermal soils at Pantelleria (Italy)

This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Volcanic and geothermal systems emit endoge-nous gases by widespread degassing from soils, including CH 4 , a greenhouse gas twenty-five times as potent as CO 2 . Recently, it has been demonstrated that volcanic or geother-mal soils are not only a source of methane, but are also sites of methanotrophic activity. Methanotrophs are able to con-sume 10–40 Tg of CH 4 a −1 and to trap more than 50 % of the methane degassing through the soils. We report on methane microbial oxidation in the geothermally most active site of Pantelleria (Italy), Favara Grande, whose total methane emis-sion was previously estimated at about 2.5 Mg a −1 (t a −1). Laboratory incubation experiments with three top-soil sam-ples from Favara Grande indicated methane consumption values of up to 59.2 nmol g −1 soil d.w. h −1 . One of the three sites, FAV2, where the highest oxidation rate was de-tected, was further analysed on a vertical soil profile, the maximum methane consumption was measured in the top-soil layer, and values greater than 6.23 nmol g −1 h −1 were still detected up to a depth of 13 cm. The highest con-sumption rate was measured at 37 • C, but a still detectable consumption at 80 • C (> 1.25 nmol g −1 h −1) was recorded. The soil total DNA extracted from the three samples was probed by Polymerase Chain Reaction (PCR) using stan-dard proteobacterial primers and newly designed verrucomi-crobial primers, targeting the unique methane monooxyge-nase gene pmoA; the presence of methanotrophs was detected at sites FAV2 and FAV3, but not at FAV1, where harsher chemical–physical conditions and negligible methane oxi-dation were detected. The pmoA gene libraries from the most active site (FAV2) pointed to a high diversity of gammaproteobacterial methanotrophs, distantly related to Methylocaldum-Metylococcus genera, and the presence of the newly discovered acido-thermophilic Verrucomicrobia methanotrophs. Alphaproteobacteria of the genus Methy-locystis were isolated from enrichment cultures under a methane-containing atmosphere at 37 • C. The isolates grow at a pH range of 3.5 to 8 and temperatures of 18–45 • C, and consume 160 nmol of CH 4 h −1 mL −1 of culture. Soils from Favara Grande showed the largest diversity of methan-otrophic bacteria detected until now in a geothermal soil. While methanotrophic Verrucomicrobia are reported as dom-inating highly acidic geothermal sites, our results suggest that slightly acidic soils, in high-enthalpy geothermal sys-tems, host a more diverse group of both culturable and un-cultivated methanotrophs.