Zinc oxide nano-particles were synthesized, characterized and used for photocatalytic degradation of doxycycline using UV-C and visible light. Effects of several operational factors including initial pH of antibiotic solution, initial antibiotic concentration and ZnO nano-particles loading amount were investigated. Comparing photocatalytic degradation and mineralization of doxycycline under UV-C and visible light showed successful application of the method under both light sources. However, reaction rate was higher under UV-C irradiation, which degraded doxycycline almost completely in 5 hours, and 68% mineralization was achieved. Synthesized ZnO nano-particles were successfully applied for photocatalytic degradation of doxycycline in a pharmaceutical wastewater sample. The process was fitted to the pseudo first order kinetic model with rate constants in the range of 6–22(×10−3) mg L−1 min−1 with respect to initial concentration of doxycycline under UV-C irradiation. The Langmuir–Hinshelwood model was also employed for describing the photocatalytic reaction with surface reaction kinetic constant kc and equilibrium adsorption constant KLH values calculated as 0.12 mg L−1 min−1 and 2.2 L mg−1, respectively. Degradation of doxycycline was followed by UV-visible spectroscopy and a validated stability indicating high-performance liquid chromatography method that was developed using stressed samples of doxycycline and could selectively determine doxycycline in the presence of its degradation products. Mass spectrometry was used for determining final degradation products.