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Oxford University Press, Nucleic Acids Research, 1(31), p. 414-417, 2003

DOI: 10.1093/nar/gkg105

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The Proteome Analysis database: a tool for the in silico analysis of whole proteomes

Journal article published in 2003 by Wolfgang Fleischmann, Alexander Kanapin, Er, Youla Karavidopoulou ORCID, Paul Kersey, Manuela Pruess, Florence Servant ORCID, Evgenia Kriventseva, Virginie Mittard, Nicola Mulder, Isabelle Phan ORCID, Rolf Apweiler
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

The Proteome Analysis database (http://www.ebi.ac.uk/proteome/) has been developed by the Sequence Database Group at EBI utilizing existing resources and providing comparative analysis of the predicted protein coding sequences of the complete genomes of bacteria, archeae and eukaryotes. Three main projects are used, InterPro, CluSTr and GO Slim, to give an overview on families, domains, sites, and functions of the proteins from each of the complete genomes. Complete proteome analysis is available for a total of 89 proteome sets. A specifically designed application enables InterPro proteome comparisons for any one proteome against any other one or more of the proteomes in the database.