351 papers found
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A pipeline for differential proteomics in unsequenced species
Database Search Engines: Paradigms, Challenges and Solutions
Protein complex analysis: From raw protein lists to protein interaction networks
SFINX: Straightforward Filtering Index for Affinity Purification–Mass Spectrometry Data Analysis
Pladipus Enables Universal Distributed Computing in Proteomics Bioinformatics
sORFs.org: a repository of small ORFs identified by ribosome profiling
Open-Source, Platform-Independent Library and Online Scripting Environment for Accessing Thermo Scientific RAW Files
Taking Aim at Moving Targets in Computational Cell Migration
Exploring the potential of public proteomics data
Open data ecosystem cell migration SI
Limited Proteolysis Combined with Stable Isotope Labeling Reveals Conformational Changes in Protein (Pseudo)kinases upon Binding Small Molecules
Ariadne’s Thread: A Robust Software Solution Leading to Automated Absolute and Relative Quantification of SRM Data
Colonic metaproteomic signatures of active bacteria and the host in obesity
Ten years of public proteomics data: How things have evolved, and where the next ten years should lead us
MS2PIP prediction server: compute and visualize MS2 peak intensity predictions for CID and HCD fragmentation
Phospho-iTRAQ data article: Assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry
An update on LNCipedia: a database for annotated human lncRNA sequences
The iceLogo web server and SOAP service for determining protein consensus sequences
Ryanodine receptors are targeted by anti-apoptotic Bcl-XL involving its BH4 domain and Lys87 from its BH3 domain
Summarization vs Peptide-Based Models in Label-Free Quantitative Proteomics: Performance, Pitfalls, and Data Analysis Guidelines
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