All papers authored by Julian Uszkoreit
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2023
David Bouyssié 
,
Pınar Altıner,
Salvador Capella-Gutierrez ,
José M. Fernández ,
Yanick Paco Hagemeijer ,
Peter Horvatovich ,
Martin Hubálek ,
Fredrik Levander ,
Pierluigi Mauri,
Magnus Palmblad ,
Wolfgang Raffelsberger,
Laura Rodríguez-Navas,
Dario Di Silvestre,
Balázs Tibor Kunkli ,
Julian Uszkoreit
and 4 other authors
,
Pınar Altıner,
Salvador Capella-Gutierrez ,
José M. Fernández ,
Yanick Paco Hagemeijer ,
Peter Horvatovich ,
Martin Hubálek ,
Fredrik Levander ,
Pierluigi Mauri,
Magnus Palmblad ,
Wolfgang Raffelsberger,
Laura Rodríguez-Navas,
Dario Di Silvestre,
Balázs Tibor Kunkli ,
Julian Uszkoreit
and 4 other authors
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows
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Benjamin A. Neely ,
Viktoria Dorfer ,
Lennart Martens ,
Isabell Bludau,
Robbin Bouwmeester ,
Sven Degroeve ,
Eric W. Deutsch ,
Siegfried Gessulat,
Lukas Käll ,
Pawel Palczynski,
Samuel H. Payne ,
Tobias Greisager Rehfeldt ,
Tobias Schmidt ,
Veit Schwämmle ,
Julian Uszkoreit
and 3 other authors
,
Viktoria Dorfer ,
Lennart Martens ,
Isabell Bludau,
Robbin Bouwmeester ,
Sven Degroeve ,
Eric W. Deutsch ,
Siegfried Gessulat,
Lukas Käll ,
Pawel Palczynski,
Samuel H. Payne ,
Tobias Greisager Rehfeldt ,
Tobias Schmidt ,
Veit Schwämmle ,
Julian Uszkoreit
and 3 other authors
Toward an Integrated Machine Learning Model of a Proteomics Experiment
Download from pubs.acs.org
2022
Karin Schork ,
Michael Turewicz ,
Julian Uszkoreit ,
Jörg Rahnenführer ,
Martin Eisenacher
,
Michael Turewicz ,
Julian Uszkoreit ,
Jörg Rahnenführer ,
Martin Eisenacher
Characterization of peptide-protein relationships in protein ambiguity groups via bipartite graphs
Download from doi.org
2021
Chengxin Dai,
Anja Füllgrabe ,
Julianus Pfeuffer,
Elizaveta M. Solovyeva ,
Jingwen Deng,
Pablo Moreno ,
Selvakumar Kamatchinathan,
Deepti Jaiswal Kundu,
Nancy George ,
Silvie Fexova,
Björn Grüning ,
Melanie Christine Föll,
Johannes Griss ,
Marc Vaudel ,
Enrique Audain
and 25 other authors
,
Julianus Pfeuffer,
Elizaveta M. Solovyeva ,
Jingwen Deng,
Pablo Moreno ,
Selvakumar Kamatchinathan,
Deepti Jaiswal Kundu,
Nancy George ,
Silvie Fexova,
Björn Grüning ,
Melanie Christine Föll,
Johannes Griss ,
Marc Vaudel ,
Enrique Audain
and 25 other authors
A proteomics sample metadata representation for multiomics integration and big data analysis
Download from doi.org
2018
Sander Willems ,
David Bouyssié,
Dieter Deforce ,
Viktoria Dorfer ,
Vladimir Gorshkov,
Dominik Kopczynski,
Kris Laukens ,
Marie Locard-Paulet ,
Veit Schwämmle,
Julian Uszkoreit ,
Dirk Valkenborg,
Marc Vaudel,
Wout Bittremieux
,
David Bouyssié,
Dieter Deforce ,
Viktoria Dorfer ,
Vladimir Gorshkov,
Dominik Kopczynski,
Kris Laukens ,
Marie Locard-Paulet ,
Veit Schwämmle,
Julian Uszkoreit ,
Dirk Valkenborg,
Marc Vaudel,
Wout Bittremieux
Proceedings of the EuBIC developer's meeting 2018
Download from zenodo.org
2017
Dominik A. Megger,
Juliet Padden,
Kristin Rosowski,
Julian Uszkoreit ,
Thilo Bracht,
Martin Eisenacher,
Christian Gerges,
Horst Neuhaus,
Brigitte Schumacher,
Jörg F. Schlaak,
Barbara Sitek
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,
Thilo Bracht,
Martin Eisenacher,
Christian Gerges,
Horst Neuhaus,
Brigitte Schumacher,
Jörg F. Schlaak,
Barbara Sitek
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2016
Enrique Audain,
Timo Sachsenberg,
Julian Uszkoreit ,
Julianus Pfeuffer,
Xiao Liang,
Henning Hermjakob,
Aniel Sanchez,
Martin Eisenacher,
Knut Reinert,
David L. Tabb,
Oliver Kohlbacher,
Yasset Perez-Riverol
Download from portal.research.lu.se
,
Julianus Pfeuffer,
Xiao Liang,
Henning Hermjakob,
Aniel Sanchez,
Martin Eisenacher,
Knut Reinert,
David L. Tabb,
Oliver Kohlbacher,
Yasset Perez-Riverol
Download from portal.research.lu.se
A. Maerkens,
M. Olivé,
A. Schreiner,
S. Feldkirchner,
J. Schessl,
J. Uszkoreit ,
K. Barkovits,
A. K. Güttsches,
V. Theis,
M. Eisenacher,
M. Tegenthoff,
L. G. Goldfarb,
R. Schröder,
B. Schoser ,
P. F. M. van der Ven
and 4 other authors
Download from dx.doi.org
,
K. Barkovits,
A. K. Güttsches,
V. Theis,
M. Eisenacher,
M. Tegenthoff,
L. G. Goldfarb,
R. Schröder,
B. Schoser ,
P. F. M. van der Ven
and 4 other authors
Download from dx.doi.org
2015
Yasset Perez-Riverol,
Qing-Wei Xu,
Rui Wang,
Julian Uszkoreit ,
Johannes Griss ,
Aniel Sanchez,
Florian Reisinger,
Attila Csordas,
Tobias Ternent,
Noemi del-Toro,
Jose A. Dianes,
Martin Eisenacher,
Henning Hermjakob,
Juan Antonio Vizcaíno
Download from doi.org
,
Johannes Griss ,
Aniel Sanchez,
Florian Reisinger,
Attila Csordas,
Tobias Ternent,
Noemi del-Toro,
Jose A. Dianes,
Martin Eisenacher,
Henning Hermjakob,
Juan Antonio Vizcaíno
Download from doi.org
2014
Sean L. Seymour,
Terry Farrah,
Pierre‐Alain A. Binz ,
Robert J. Chalkley,
John S. Cottrell,
Brian C. Searle,
David L. Tabb,
Gorka Prieto,
Juan Antonio Vizcaíno ,
Julian Uszkoreit ,
Martin Eisenacher,
Salvador Martínez‐Bartolomé,
Fawaz Ghali,
Andrew R. Jones
,
Robert J. Chalkley,
John S. Cottrell,
Brian C. Searle,
David L. Tabb,
Gorka Prieto,
Juan Antonio Vizcaíno ,
Julian Uszkoreit ,
Martin Eisenacher,
Salvador Martínez‐Bartolomé,
Fawaz Ghali,
Andrew R. Jones
A standardized framing for reporting protein identifications in mzIdentML 1.2
Download from onlinelibrary.wiley.com
Julian Uszkoreit ,
Nicole Plohnke,
Sascha Rexroth,
Katrin Marcus,
Martin Eisenacher
,
Nicole Plohnke,
Sascha Rexroth,
Katrin Marcus,
Martin Eisenacher
The bacterial proteogenomic pipeline
Download from dx.doi.org
2013
Fabian M. Nensa,
Martin H. D. Neumann,
Andreas Schroetter,
Andreas Schrötter,
Andre Przyborski,
Thomas Mastalski,
Sergej Susdalzew,
Christina Loosse,
Christina Looβe,
Stefan Helling,
Fouzi El Magraoui,
Fouzi El Magraoui,
Ralf Erdmann,
Helmut E. Meyer,
Julian Uszkoreit
and 11 other authors
Download from www.mcponline.org
and 11 other authors
Download from www.mcponline.org
Mathias Walzer,
Da Qi,
Gerhard Mayer,
Julian Uszkoreit ,
Martin Eisenacher,
Timo Sachsenberg,
Faviel F. Gonzalez-Galarza,
Jun Fan,
Conrad Bessant,
Eric W. Deutsch ,
Florian Reisinger,
Juan Antonio Vizcaíno ,
J. Alberto Medina Aunon,
J. Alberto Medina-Aunon,
Juan Pablo Albar
and 2 other authors
,
Martin Eisenacher,
Timo Sachsenberg,
Faviel F. Gonzalez-Galarza,
Jun Fan,
Conrad Bessant,
Eric W. Deutsch ,
Florian Reisinger,
Juan Antonio Vizcaíno ,
J. Alberto Medina Aunon,
J. Alberto Medina-Aunon,
Juan Pablo Albar
and 2 other authors
The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics*
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Andreas Schrötter,
Thomas Mastalski,
Fabian M. Nensa,
Martin Neumann,
Christina Loosse,
Kathy Pfeiffer,
Fouzi El Magraoui,
Harald W. Platta,
Ralf Erdmann,
Carsten Theiss,
Julian Uszkoreit ,
Martin Eisenacher,
Helmut E. Meyer,
Katrin Marcus,
Thorsten Müller
Download from jcs.biologists.org
,
Martin Eisenacher,
Helmut E. Meyer,
Katrin Marcus,
Thorsten Müller
Download from jcs.biologists.org
Alexandra Maerkens,
Rudolf Andre Kley,
Montse Olivé,
Verena Theis,
Petrus Frederikus Maria van der Ven ,
Jens Reimann,
Hendrik Milting,
Anja Schreiner,
Martin Eisenacher,
Julian Uszkoreit ,
Katalin Barkovits,
Anne-Katrin Güttsches,
Jason Tonillo,
Katja Kuhlmann,
Helmut E. Meyer
and 7 other authors
,
Jens Reimann,
Hendrik Milting,
Anja Schreiner,
Martin Eisenacher,
Julian Uszkoreit ,
Katalin Barkovits,
Anne-Katrin Güttsches,
Jason Tonillo,
Katja Kuhlmann,
Helmut E. Meyer
and 7 other authors
Differential proteomic analysis of abnormal intramyoplasmic aggregates in desminopathy
Download from europepmc.org
2012
Rudolf A. Kley,
Alexandra Maerkens,
Yvonne Leber,
Verena Theis,
Anja Schreiner,
Peter F. M. van der Ven ,
Julian Uszkoreit ,
Christian Stephan,
Stefan Eulitz,
Nicole Euler,
Janbernd Kirschner,
Klaus Müller,
Helmut E. Meyer,
Martin Tegenthoff,
Dieter O. Fürst
and 3 other authors
Download from doi.org
,
Julian Uszkoreit ,
Christian Stephan,
Stefan Eulitz,
Nicole Euler,
Janbernd Kirschner,
Klaus Müller,
Helmut E. Meyer,
Martin Tegenthoff,
Dieter O. Fürst
and 3 other authors
Download from doi.org
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