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All papers authored by John Parkinson

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2021 Ana Popovic

ORCID

, Celine Bourdon, Pauline W. Wang, David S. Guttman

ORCID

ORCID

, Zulfiqar A. Bhutta, Robert H. J. Bandsma, John Parkinson

ORCID

, Lisa G. Pell

Micronutrient supplements can promote disruptive protozoan and fungal communities in the developing infant gut

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2017 Javi Zhang, Asis Khan, Andrea Kennard, Michael E. Grigg, John Parkinson

ORCID

PopNet: A Markov Clustering Approach to Study Population Genetic Structure

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Gisella Vetere, Justin W. Kenney, Lina M. Tran, Frances Xia, Patrick E. Steadman, John Parkinson

ORCID

, Sheena A. Josselyn, Paul W. Frankland

Chemogenetic Interrogation of a Brain-wide Fear Memory Network in Mice

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Nicole L. Bertschi, Christa G. Toenhake, Angela Zou, Igor Niederwieser, Rob Henderson, Suzette Moes, Paul Jenoe, John Parkinson

ORCID

, Richard Bartfai, Till S. Voss

Malaria parasites possess a telomere repeat-binding protein that shares ancestry with transcription factor IIIA

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Lakshmipuram Seshadri Swapna, John Parkinson

ORCID

Genomics of apicomplexan parasites

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2016 James A. Cotton

ORCID

, Sasisekhar Bennuru

ORCID

, Alexandra Grote, Bhavana Harsha, Alan Tracey, Robin Beech, Stephen R. Doyle

ORCID

, Matthew Dunn, Julie C. Dunning Hotopp, Julie C. Dunning Hotopp, Nancy Holroyd, Taisei Kikuchi, Olivia Lambert, Amruta Mhashilkar, Prudence Mutowo and 13 other authors

The genome of Onchocerca volvulus, agent of river blindness

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Valeria Di Giovanni, Celine Bourdon

ORCID

, Dominic X. Wang, Swapna Seshadri, Edward Senga, Christian J. Versloot, Wieger Voskuijl

ORCID

, Richard D. Semba, Indi Trehan

ORCID

, Ruin Moaddel, M. Isabel Ordiz, Ling Zhang, John Parkinson

ORCID

, Mark J. Manary, Robert Hj Bandsma

Metabolomic Changes in Serum of Children with Different Clinical Diagnoses of Malnutrition

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Hernan Lorenzi

ORCID

, Asis Khan, Michael S. Behnke, Sivaranjani Namasivayam, Lakshmipuram S. Swapna, Michalis Hadjithomas, Svetlana Karamycheva

ORCID

, Deborah Pinney, Brian P. Brunk, James W. Ajioka, Daniel Ajzenberg, John C. Boothroyd, Jon P. Boyle, Marie L. Dardé, Maria A. Diaz Miranda and 18 other authors

Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes

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Graham L. Cromar, Anthony Zhao, Xuejian Xiong, Lakshmipuram S. Swapna, Noeleen Loughran, Hongyan Song, John Parkinson

ORCID

PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya

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Samantha Halliday, John Parkinson

ORCID

Gist: an ensemble approach to the taxonomic classification of metatranscriptomic sequence data.

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Ashwani Kumar, Natalia Beloglazova, Cedoljub Bundalovic-Torma, Sadhna Phanse, Viktor Deineko, Alla Gagarinova, Gabriel Musso, James Vlasblom, Sofia Lemak, Mohsen Hooshyar, Zoran Minic, Omar Wagih

ORCID

, Roberto Mosca, Patrick Aloy, Ashkan Golshani and 4 other authors

Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli

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2015 Sadhna Phanse, Cuihong Wan, Blake Borgeson

ORCID

, Fan Tu, Alexandr Berzginov, Kevin Drew, Kyle Chessman, Greg Clark, Swati Pal, Graham Cromar, Xuejian Xiong, Ophelia Papoulas, Olga Kagan, Zuyao Ni, Daniel R. Boutz and 15 other authors

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

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Cuihong Wan, Blake Borgeson, Sadhna Phanse, Fan Tu, Kevin Drew, Greg Clark, Kyle Chessman, Xuejian Xiong, Swati Pal, Olga Kagan, Graham Cromar, Ophelia Papoulas, Julian Kwan

ORCID

, Zuyao Ni, Daniel R. Boutz and 16 other authors

Panorama of ancient metazoan macromolecular complexes

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Yuanhao Zhang, Leahana Rowehl, Julia M. Krumsiek, Erika P. Orner, Nurmohammad Shaikh, Phillip I. Tarr, Erica Sodergren, George M. Weinstock, Edgar C. Boedeker, Xuejian Xiong, John Parkinson

ORCID

, Daniel N. Frank, Ellen Li, Grace Gathungu

Correction: Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

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Yuanhao Zhang, Leahana Rowehl, Julia M. Krumsiek, Erika P. Orner, Nurmohammad Shaikh, Phillip I. Tarr, Erica Sodergren, George M. Weinstock, Edgar C. Boedeker, Xuejian Xiong, John Parkinson

ORCID

, Daniel N. Frank, Ellen Li, Grace Gathungu

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

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Graham L. Cromar, Anthony Zhao, Alex Yang, John Parkinson

ORCID

Hyperscape: visualization for complex biological networks: Fig. 1.

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Cedoljub Bundalovic-Torma, John Parkinson

ORCID

Comparative Genomics and Evolutionary Modularity of Prokaryotes

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2014 Johanna Wetzel, Susann Herrmann, Lakshmipuram Seshadri Swapna, Dhaneswar Prusty, Arun T. John Peter, Maya Kono, Sidharth Saini, Srinivas Nellimarla, Tatianna Wai Ying Wong, Louisa Wilcke, Olivia Ramsay, Ana Cabrera, Laura Biller, Dorothee Heincke, Karen Mossman and 4 other authors

The Role of Palmitoylation for Protein Recruitment to the Inner Membrane Complex of the Malaria Parasite

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Graham L. Cromar, Ka-Chun Wong, Noeleen Loughran, Tuan On, Hongyan Song, Xuejian Xiong, Zhaolei Zhang, John Parkinson

ORCID

New Tricks for “Old” Domains: How Novel Architectures and Promiscuous Hubs Contributed to the Organization and Evolution of the ECM

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Adam J. Reid

ORCID

, Damer P. Blake

ORCID

, Hifzur R. Ansari, Karen Billington, Hilary P. Browne, Josephine Bryant, Matt Dunn, Stacy S. Hung, Fumiya Kawahara, Diego Miranda-Saavedra, Tareq B. Malas, Tobias Mourier, Hardeep Naghra, Mridul Nair, Thomas D. Otto and 20 other authors

Genomic analysis of the causative agents of coccidiosis in domestic chickens

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