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All papers authored by Andrew Doxey

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2023 Harold P. Hodgins, Pengsheng Chen, Briallen Lobb, Xin Wei, Benjamin J. M. Tremblay

ORCID

, Michael J. Mansfield

ORCID

, Victoria C. Y. Lee, Pyung-Gang Lee, Jeffrey Coffin, Ana T. Duggan

ORCID

, Alexis E. Dolphin, Gabriel Renaud

ORCID

, Min Dong

ORCID

, Andrew C. Doxey

ORCID

Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains

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2022 Songhai Tian

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, Xiaozhe Xiong, Ji Zeng, Siyu Wang, Benjamin Jean-Marie Tremblay

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, Peng Chen, Baohua Chen, Min Liu, Pengsheng Chen, Kuanwei Sheng

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, Daniel Zeve, Wanshu Qi, David T. Breault

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, César Rodríguez

ORCID

, Ralf Gerhard and 3 other authors

Identification of TFPI as a receptor reveals recombination-driven receptor switching in Clostridioides difficile toxin B variants

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2021 Daniel Richard, Pushpanathan Muthuirulan, Jennifer Aguiar, Andrew C. Doxey

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, Arinjay Banerjee, Karen Mossman, Jeremy Hirota, Terence D. Capellini

Intronic regulation of SARS-CoV-2 receptor (ACE2) expression mediated by immune signaling and oxidative stress pathways

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Daniel Min

ORCID

, Andrew C. Doxey

ORCID

, Joshua D. Neufeld

ORCID

AXIOME3: Automation, eXtension, and Integration Of Microbial Ecology

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Benjamin J.-M. Tremblay

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, Briallen Lobb, Andrew C. Doxey

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PhyloCorrelate: inferring bacterial gene-gene functional associations through large-scale phylogenetic profiling

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2020 Michael J. Mansfield

ORCID

, Ji Zeng

ORCID

, Xin Wei, Jay Worley

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, Harold Hodgins, Benjamin Jean-Marie Tremblay

ORCID

, Lynn Bry, Min Dong

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, Andrew C. Doxey

ORCID

Phylogenomics of 8,839 Clostridioides difficile genomes reveals recombination-driven evolution and diversification of toxin A and B

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Arinjay Banerjee

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, Andrew C. Doxey

ORCID

, Benjamin J.-M. Tremblay

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, Michael J. Mansfield, Sonu Subudhi

ORCID

, Jeremy A. Hirota, Matthew S. Miller

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, Andrew G. McArthur

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, Samira Mubareka, Karen Mossman

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Predicting the recombination potential of severe acute respiratory syndrome coronavirus 2 and Middle East respiratory syndrome coronavirus

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Sura Ali, Benjamin Jenkins, Jiujun Cheng, Briallen Lobb, Xin Wei, Suhelen Egan, Trevor C. Charles, Brendan J. McConkey, John Austin

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, Andrew C. Doxey

ORCID

Slr4, a newly identified S‐layer protein from marine Gammaproteobacteria, is a major biofilm matrix component

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Briallen Lobb, Rhiannon Hodgson, Michael D. J. Lynch

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, Michael J. Mansfield, Jiujun Cheng, Trevor C. Charles

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, Josh D. Neufeld

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, Paul M. Craig, Andrew C. Doxey

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Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens

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Emilie Spasov

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, Jackson M. Tsuji

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, Laura A. Hug, Andrew C. Doxey

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, Laura A. Sauder, Wayne J. Parker, Josh D. Neufeld

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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant

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Kathleen E. Orrell

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, Michael J. Mansfield, Andrew C. Doxey

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, Roman A. Melnyk

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The C. difficile toxin B membrane translocation machinery is an evolutionarily conserved protein delivery apparatus

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2019 Lee H. Bergstrand, Josh D. Neufeld, Andrew C. Doxey

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Pygenprop: a Python library for programmatic exploration and comparison of organism Genome Properties

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Andrew C. Doxey

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, Michael J. Mansfield, Briallen Lobb

Exploring the Evolution of Virulence Factors through Bioinformatic Data Mining

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Michael James Mansfield, Travis Gwynn Wentz, Sicai Zhang, Elliot Jeon Lee, Min Dong, Shashi Kant Sharma, Andrew Charles Doxey

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Bioinformatic discovery of a toxin family in Chryseobacterium piperi with sequence similarity to botulinum neurotoxins

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Jennifer A. Aguiar, Ryan D. Huff, Wayne Tse, Martin R. Stampfli

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, Brendan J. McConkey, Andrew C. Doxey

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, Jeremy A. Hirota

A comparative analysis of cannabis and tobacco smoke exposure on human airway epithelial cell gene expression, immune phenotype, and response to formoterol and budesonide treatment

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2018 Michael J. Mansfield, Seiji N. Sugiman-Marangos, Roman A. Melnyk, Andrew C. Doxey

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Identification of a diphtheria toxin-like gene family beyond the Corynebacterium genus

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Andrew C. Doxey

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, Michael J. Mansfield, Cesare Montecucco

Discovery of novel bacterial toxins by genomics and computational biology

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Michael J. Mansfield, Andrew C. Doxey

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Genomic insights into the evolution and ecology of botulinum neurotoxins

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2017 Michael J. Mansfield, Mansfield Mj, Wentz Tg, Travis G. Wentz, Sicai Zhang, Lee Ej, Elliot J. Lee, Min Dong, Shashi K. Sharma, Sharma Sk, Doxey Ac, Andrew C. Doxey

ORCID

Newly identified relatives of botulinum neurotoxins shed light on their molecular evolution

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Maya D’Alessio

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, Ricardo Nordeste, Andrew C. Doxey

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, Trevor C. Charles

ORCID

Transcriptome Analysis of Polyhydroxybutyrate Cycle Mutants Reveals Discrete Loci Connecting Nitrogen Utilization and Carbon Storage in Sinorhizobium meliloti

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