All papers authored by Rafael Kramann
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2023
Nadine Kaesler 
,
Mingbo Cheng ,
James Nagai ,
James O’Sullivan ,
Fabian Peisker ,
Eric M. J. Bindels ,
Anne Babler ,
Julia Moellmann ,
Patrick Droste ,
Giulia Franciosa ,
Aurelien Dugourd ,
Julio Saez-Rodriguez ,
Sabine Neuss,
Michael Lehrke ,
Peter Boor
and 9 other authors
,
Mingbo Cheng ,
James Nagai ,
James O’Sullivan ,
Fabian Peisker ,
Eric M. J. Bindels ,
Anne Babler ,
Julia Moellmann ,
Patrick Droste ,
Giulia Franciosa ,
Aurelien Dugourd ,
Julio Saez-Rodriguez ,
Sabine Neuss,
Michael Lehrke ,
Peter Boor
and 9 other authors
Mapping cardiac remodeling in chronic kidney disease
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Junedh M. Amrute ,
Lulu Lai ,
Pan Ma,
Andrew L. Koenig ,
Kenji Kamimoto ,
Andrea Bredemeyer ,
Thirupura S. Shankar,
Christoph Kuppe ,
Farid F. Kadyrov,
Linda J. Schulte,
Dylan Stoutenburg,
Benjamin J. Kopecky ,
Sutip Navankasattusas,
Joseph Visker ,
Samantha A. Morris
and 5 other authors
,
Lulu Lai ,
Pan Ma,
Andrew L. Koenig ,
Kenji Kamimoto ,
Andrea Bredemeyer ,
Thirupura S. Shankar,
Christoph Kuppe ,
Farid F. Kadyrov,
Linda J. Schulte,
Dylan Stoutenburg,
Benjamin J. Kopecky ,
Sutip Navankasattusas,
Joseph Visker ,
Samantha A. Morris
and 5 other authors
Defining cardiac functional recovery in end-stage heart failure at single-cell resolution
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Dominik Kylies,
Marina Zimmermann ,
Fabian Haas ,
Maria Schwerk ,
Malte Kuehl ,
Michael Brehler,
Jan Czogalla,
Lola C. Hernandez ,
Leonie Konczalla ,
Yusuke Okabayashi ,
Julia Menzel,
Ilka Edenhofer,
Sam Mezher,
Hande Aypek,
Bernhard Dumoulin
and 22 other authors
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,
Fabian Haas ,
Maria Schwerk ,
Malte Kuehl ,
Michael Brehler,
Jan Czogalla,
Lola C. Hernandez ,
Leonie Konczalla ,
Yusuke Okabayashi ,
Julia Menzel,
Ilka Edenhofer,
Sam Mezher,
Hande Aypek,
Bernhard Dumoulin
and 22 other authors
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Konrad Hoeft ,
Gideon J. L. Schaefer,
Hyojin Kim,
David Schumacher,
Tore Bleckwehl,
Qingqing Long,
Barbara Mara Klinkhammer,
Fabian Peisker ,
Lars Koch,
James Nagai,
Maurice Halder,
Susanne Ziegler,
Elisa Liehn,
Christoph Kuppe,
Jennifer Kranz
and 7 other authors
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,
Gideon J. L. Schaefer,
Hyojin Kim,
David Schumacher,
Tore Bleckwehl,
Qingqing Long,
Barbara Mara Klinkhammer,
Fabian Peisker ,
Lars Koch,
James Nagai,
Maurice Halder,
Susanne Ziegler,
Elisa Liehn,
Christoph Kuppe,
Jennifer Kranz
and 7 other authors
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Kim van Kuijk ,
Ian R. McCracken ,
Renée J. H. A. Tillie ,
Sebastiaan E. J. Asselberghs ,
Dlzar A. Kheder ,
Stan Muitjens,
Han Jin ,
Richard S. Taylor,
Ruud Wichers Schreur,
Christoph Kuppe ,
Ross Dobie ,
Prakesh Ramachandran ,
Marion J. Gijbels ,
Lieve Temmerman ,
Phoebe M. Kirkwoord
and 13 other authors
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,
Ian R. McCracken ,
Renée J. H. A. Tillie ,
Sebastiaan E. J. Asselberghs ,
Dlzar A. Kheder ,
Stan Muitjens,
Han Jin ,
Richard S. Taylor,
Ruud Wichers Schreur,
Christoph Kuppe ,
Ross Dobie ,
Prakesh Ramachandran ,
Marion J. Gijbels ,
Lieve Temmerman ,
Phoebe M. Kirkwoord
and 13 other authors
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Zhijian Li ,
James S. Nagai ,
Christoph Kuppe ,
Rafael Kramann ,
Ivan G. Costa
,
James S. Nagai ,
Christoph Kuppe ,
Rafael Kramann ,
Ivan G. Costa
scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference
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2022
Jennifer Eymael,
Martijn van den Broek ,
Laura Miesen ,
Valerie Villacorta Monge,
Bartholomeus T. van den Berge ,
Fieke Mooren,
Vicky Luna Velez,
Jelmer Dijkstra,
Meyke Hermsen ,
Peter Bandi ,
Michiel Vermeulen ,
Saskia de Wildt ,
Brigith Willemsen,
Sandrine Florquin ,
Roy Wetzels
and 8 other authors
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,
Laura Miesen ,
Valerie Villacorta Monge,
Bartholomeus T. van den Berge ,
Fieke Mooren,
Vicky Luna Velez,
Jelmer Dijkstra,
Meyke Hermsen ,
Peter Bandi ,
Michiel Vermeulen ,
Saskia de Wildt ,
Brigith Willemsen,
Sandrine Florquin ,
Roy Wetzels
and 8 other authors
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Yaoxian Xu,
Christoph Kuppe ,
Javier Perales-Patón ,
Sikander Hayat ,
Jennifer Kranz,
Ali T. Abdallah,
James Nagai,
Zhijian Li ,
Fabian Peisker ,
Turgay Saritas ,
Maurice Halder ,
Sylvia Menzel,
Konrad Hoeft ,
Annegien Kenter ,
Hyojin Kim
and 24 other authors
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,
Javier Perales-Patón ,
Sikander Hayat ,
Jennifer Kranz,
Ali T. Abdallah,
James Nagai,
Zhijian Li ,
Fabian Peisker ,
Turgay Saritas ,
Maurice Halder ,
Sylvia Menzel,
Konrad Hoeft ,
Annegien Kenter ,
Hyojin Kim
and 24 other authors
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Christoph Kuppe ,
Ricardo O. Ramirez Flores ,
Zhijian Li ,
Sikander Hayat ,
Rebecca T. Levinson,
Xian Liao,
Monica T. Hannani ,
Jovan Tanevski ,
Florian Wünnemann,
James S. Nagai,
Maurice Halder ,
David Schumacher ,
Sylvia Menzel,
Gideon Schäfer,
Konrad Hoeft
and 28 other authors
,
Ricardo O. Ramirez Flores ,
Zhijian Li ,
Sikander Hayat ,
Rebecca T. Levinson,
Xian Liao,
Monica T. Hannani ,
Jovan Tanevski ,
Florian Wünnemann,
James S. Nagai,
Maurice Halder ,
David Schumacher ,
Sylvia Menzel,
Gideon Schäfer,
Konrad Hoeft
and 28 other authors
Spatial multi-omic map of human myocardial infarction
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Fabian Peisker ,
Maurice Halder ,
James Nagai ,
Susanne Ziegler,
Nadine Kaesler,
Konrad Hoeft ,
Ronghui Li,
Eric M. J. Bindels ,
Christoph Kuppe ,
Julia Moellmann,
Michael Lehrke,
Christian Stoppe,
Michael T. Schaub ,
Rebekka K. Schneider ,
Ivan Costa
and 1 other authors
,
Maurice Halder ,
James Nagai ,
Susanne Ziegler,
Nadine Kaesler,
Konrad Hoeft ,
Ronghui Li,
Eric M. J. Bindels ,
Christoph Kuppe ,
Julia Moellmann,
Michael Lehrke,
Christian Stoppe,
Michael T. Schaub ,
Rebekka K. Schneider ,
Ivan Costa
and 1 other authors
Mapping the cardiac vascular niche in heart failure
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Jitske Jansen ,
Bartholomeus T. van den Berge ,
Martijn van den Broek ,
Rutger J. Maas ,
Deniz Daviran ,
Brigith Willemsen,
Rona Roverts ,
Marit van der Kruit,
Christoph Kuppe ,
Katharina C. Reimer ,
Gianluca Di Giovanni,
Fieke Mooren,
Quincy Nlandu ,
Helmer Mudde ,
Roy Wetzels
and 18 other authors
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,
Bartholomeus T. van den Berge ,
Martijn van den Broek ,
Rutger J. Maas ,
Deniz Daviran ,
Brigith Willemsen,
Rona Roverts ,
Marit van der Kruit,
Christoph Kuppe ,
Katharina C. Reimer ,
Gianluca Di Giovanni,
Fieke Mooren,
Quincy Nlandu ,
Helmer Mudde ,
Roy Wetzels
and 18 other authors
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Anne von Mässenhausen ,
Nadia Zamora Gonzalez,
Francesca Maremonti ,
Alexia Belavgeni ,
Wulf Tonnus ,
Claudia Meyer ,
Kristina Beer,
Monica T. Hannani ,
Arthur Lau ,
Mirko Peitzsch,
Paul Hoppenz ,
Sophie Locke,
Triantafyllos Chavakis,
Rafael Kramann ,
Daniel A. Muruve
and 3 other authors
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,
Nadia Zamora Gonzalez,
Francesca Maremonti ,
Alexia Belavgeni ,
Wulf Tonnus ,
Claudia Meyer ,
Kristina Beer,
Monica T. Hannani ,
Arthur Lau ,
Mirko Peitzsch,
Paul Hoppenz ,
Sophie Locke,
Triantafyllos Chavakis,
Rafael Kramann ,
Daniel A. Muruve
and 3 other authors
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2021
Zhijian Li ,
Christoph Kuppe ,
Susanne Ziegler,
Mingbo Cheng,
Nazanin Kabgani,
Sylvia Menzel,
Martin Zenke,
Rafael Kramann ,
Ivan G. Costa
,
Christoph Kuppe ,
Susanne Ziegler,
Mingbo Cheng,
Nazanin Kabgani,
Sylvia Menzel,
Martin Zenke,
Rafael Kramann ,
Ivan G. Costa
Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen
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Vitor Vieira,
Abel Sousa,
Christoph Kuppe ,
Marco Sciacovelli ,
Enio Gjerga ,
Attila Gabor,
Kristina B. Emdal,
Aurelien Dugourd ,
Jennifer Kranz,
Miguel Rocha,
Jesper V. Olsen ,
Julio Saez‐Rodriguez ,
Christian Frezza ,
Eric M. J. Bindels,
Dorte B. Bekker‐Jensen
and 3 other authors
,
Marco Sciacovelli ,
Enio Gjerga ,
Attila Gabor,
Kristina B. Emdal,
Aurelien Dugourd ,
Jennifer Kranz,
Miguel Rocha,
Jesper V. Olsen ,
Julio Saez‐Rodriguez ,
Christian Frezza ,
Eric M. J. Bindels,
Dorte B. Bekker‐Jensen
and 3 other authors
Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses
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2020
Christoph Kuppe ,
Mahmoud M. Ibrahim ,
Jennifer Kranz,
Xiaoting Zhang,
Susanne Ziegler,
Javier Perales-Patón ,
Jitske Jansen,
Katharina C. Reimer ,
James R. Smith,
Ross Dobie,
John R. Wilson-Kanamari ,
Maurice Halder ,
Yaoxian Xu,
Nazanin Kabgani,
Nadine Kaesler
and 14 other authors
,
Mahmoud M. Ibrahim ,
Jennifer Kranz,
Xiaoting Zhang,
Susanne Ziegler,
Javier Perales-Patón ,
Jitske Jansen,
Katharina C. Reimer ,
James R. Smith,
Ross Dobie,
John R. Wilson-Kanamari ,
Maurice Halder ,
Yaoxian Xu,
Nazanin Kabgani,
Nadine Kaesler
and 14 other authors
Decoding myofibroblast origins in human kidney fibrosis
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Nassim Bouteldja ,
Barbara M. Klinkhammer ,
Roman D. Bülow ,
Patrick Droste ,
Simon W. Otten,
Saskia Freifrau von Stillfried ,
Julia Moellmann,
Susan M. Sheehan,
Ron Korstanje,
Sylvia Menzel,
Peter Bankhead,
Matthias Mietsch ,
Charis Drummer,
Michael Lehrke,
Rafael Kramann
and 3 other authors
,
Barbara M. Klinkhammer ,
Roman D. Bülow ,
Patrick Droste ,
Simon W. Otten,
Saskia Freifrau von Stillfried ,
Julia Moellmann,
Susan M. Sheehan,
Ron Korstanje,
Sylvia Menzel,
Peter Bankhead,
Matthias Mietsch ,
Charis Drummer,
Michael Lehrke,
Rafael Kramann
and 3 other authors
Deep Learning–Based Segmentation and Quantification in Experimental Kidney Histopathology
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2015
Rafael Kramann ,
Rebekka K. Schneider,
Derek P. DiRocco,
Flavia Machado,
Susanne Fleig,
Philip A. Bondzie,
Joel M. Henderson,
Benjamin L. Ebert,
Benjamin D. Humphreys
,
Rebekka K. Schneider,
Derek P. DiRocco,
Flavia Machado,
Susanne Fleig,
Philip A. Bondzie,
Joel M. Henderson,
Benjamin L. Ebert,
Benjamin D. Humphreys
Perivascular Gli1+ Progenitors Are Key Contributors to Injury-Induced Organ Fibrosis
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